Click here to switch to the map view.

The map label for this gene is ycdK [C]

Identifier: 83312931

GI number: 83312931

Start: 4232663

End: 4233037

Strand: Reverse

Name: ycdK [C]

Synonym: amb3832

Alternate gene names: 83312931

Gene position: 4233037-4232663 (Counterclockwise)

Preceding gene: 83312932

Following gene: 83312930

Centisome position: 85.22

GC content: 66.4

Gene sequence:

>375_bases
ATGACCCGTCAGCTGATCTCTTCCGGTTCCTCGTTCGAGGAAGTGGCCGGCTATTCCCGTGCCGTGCGCCAGGACCCCTG
GGTGTTCGTCTCCGGCACCTCGGGCTTCAAGGATGGGCAGATCGCCGACGACGTGGTCGCCCAGGCCGAGCAGTGCATCG
CCACCATCGCCGCCGCGCTGGAGCAGGGCGGCGCGTCGCTGAAGGACGTGGTCCGCGTCAAGGCCTACATCACCGAAGCC
GCCTTCTTCGAGCAGATCGCCCCGGTGCTGGGCAAGGCCTTCAAGGGCATCCGCCCGGCCAACACCACCATCGTCTGCGG
CCTGGTCGATCCGCGCATGAAGGTGGAGATCGAGGTCACCGCTCTCAAGGCGTAA

Upstream 100 bases:

>100_bases
CCGCGAGGGCCGCGTGCCGTTCCTCGAGCGCATCTTGGCGGGCTGACCCGAAATACGCTATGAAGCTGTCTTCCATCATT
TCTGTCTTAAGGACCGTTCC

Downstream 100 bases:

>100_bases
AGAGCGGCGGGGACGGCCGCGCTCCGGGCATGGAGCGCGGGCATCCTGCCCGCCAACCAACGGAGGACGCATCATGCCCA
CCATCCTGATCACCGGCGCC

Product: putative translation initiation inhibitor

Products: NA

Alternate protein names: Endoribonuclease L-PSP Family Protein; Endoribonuclease; Pyrimidine Utilization Protein C; Translation Initiation Inhibitor; Acetyltransferase; Endoribonuclease L-PSP Family; Aldo/Keto Reductase Family Protein; Oxidoreductase Aldo/Keto Reductase Family; YjgF-Family Protein; Translation Initiation Inhibitor-Related Protein; Endoribonuclease L-PSP YjgF-Like; Endoribonuclease L-Psp; Ribonuclease PSP-Type; Endoribonuclease L-PSP Superfamily; Aldo/Keto Reductase; YigF Family Translation Initiation Factor

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MTRQLISSGSSFEEVAGYSRAVRQDPWVFVSGTSGFKDGQIADDVVAQAEQCIATIAAALEQGGASLKDVVRVKAYITEA
AFFEQIAPVLGKAFKGIRPANTTIVCGLVDPRMKVEIEVTALKA

Sequences:

>Translated_124_residues
MTRQLISSGSSFEEVAGYSRAVRQDPWVFVSGTSGFKDGQIADDVVAQAEQCIATIAAALEQGGASLKDVVRVKAYITEA
AFFEQIAPVLGKAFKGIRPANTTIVCGLVDPRMKVEIEVTALKA
>Mature_123_residues
TRQLISSGSSFEEVAGYSRAVRQDPWVFVSGTSGFKDGQIADDVVAQAEQCIATIAAALEQGGASLKDVVRVKAYITEAA
FFEQIAPVLGKAFKGIRPANTTIVCGLVDPRMKVEIEVTALKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13179; Mature: 13048

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRQLISSGSSFEEVAGYSRAVRQDPWVFVSGTSGFKDGQIADDVVAQAEQCIATIAAAL
CCCCHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
EQGGASLKDVVRVKAYITEAAFFEQIAPVLGKAFKGIRPANTTIVCGLVDPRMKVEIEVT
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEE
ALKA
EECC
>Mature Secondary Structure 
TRQLISSGSSFEEVAGYSRAVRQDPWVFVSGTSGFKDGQIADDVVAQAEQCIATIAAAL
CCCHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
EQGGASLKDVVRVKAYITEAAFFEQIAPVLGKAFKGIRPANTTIVCGLVDPRMKVEIEVT
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEE
ALKA
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA