Click here to switch to the map view.

The map label for this gene is flgF [H]

Identifier: 83312595

GI number: 83312595

Start: 3842218

End: 3842979

Strand: Reverse

Name: flgF [H]

Synonym: amb3496

Alternate gene names: 83312595

Gene position: 3842979-3842218 (Counterclockwise)

Preceding gene: 83312610

Following gene: 83312594

Centisome position: 77.37

GC content: 63.52

Gene sequence:

>762_bases
TTGCCAACACGGATCGAGACCATGCAGAACACATCTTACATCGCTCTCTCCCGCCAGGCGGCCCTGTGGCGCCAGATGGA
AGTCGTGGCCAACAACATGGCCAATGCCAACACCCCCGCCTTCAAAGGCGAAGAGATGATGTTCCGCGAGTTTCTGGTGC
CGACCCGCTCGTCCGAGCGTGCCGTCGGCGGCAAGCTCTCCTTCGTCCAGGACGTGGGCGTGCTGCGCGACACCCGCGAA
GGTCCGCTGACCAAGACCGACAATCCCCTGGATTTCGCCCTGCACGGCGACGGCTACTTCCAGATCGAGACCGAAGCCGG
CATGCGCTATGCCCGCAACGGCCATTTCCGCCTGGACCAGACCGGCATGCTGGTCAATTCCCAGGGTTACGCGGTGATGG
ACGACCGGGACCAGCCCATCGTCTTCGCCCCCAACGAGACCCGGGTGGAAGTGGCATCCGACGGCACCGTCTCCACCGAG
AACGGCCGCGTCGCCCGCCTCAAGGTGGTCAAGTTCGAGAACGACCAGCAGATGCGCAAGGCCGGCGACTCCCTCTACGA
GACCACCCAGGAGCCCGAAGTGGTGCAAAGCCCCCACGTCGCCCAGGGGATGATGGAGGAATCCAATGTCCAGCCGGTGC
TGGAGATGACCCGCATGACCCAGATTCTGCGCGAATATCAGGGTGTCCAGAAGATGCTGGACGCCGAGCACGACCGCCAG
CTCAAGGCCATCCAGGCCCTGGGCTTCACCAAGACCAACTGA

Upstream 100 bases:

>100_bases
GGCAAGCCCTTCCCGGAACTGGGGGCTTGACGGGGAAAATGGTGGAAATGCTCGATTTCTGAAATTGGCACGCCGGTTGC
GAGACTGGTGGCGCAAGCAA

Downstream 100 bases:

>100_bases
CCGGTTCAACGAGTAAGGAACTCTCGCCATGCGCTCCCTGAACATCGCCGCGACCGGCATGCTGGCCCAGCAGACCAACG
TCGAAGTCATCTCGAACAAC

Product: flagellar basal body rod protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MPTRIETMQNTSYIALSRQAALWRQMEVVANNMANANTPAFKGEEMMFREFLVPTRSSERAVGGKLSFVQDVGVLRDTRE
GPLTKTDNPLDFALHGDGYFQIETEAGMRYARNGHFRLDQTGMLVNSQGYAVMDDRDQPIVFAPNETRVEVASDGTVSTE
NGRVARLKVVKFENDQQMRKAGDSLYETTQEPEVVQSPHVAQGMMEESNVQPVLEMTRMTQILREYQGVQKMLDAEHDRQ
LKAIQALGFTKTN

Sequences:

>Translated_253_residues
MPTRIETMQNTSYIALSRQAALWRQMEVVANNMANANTPAFKGEEMMFREFLVPTRSSERAVGGKLSFVQDVGVLRDTRE
GPLTKTDNPLDFALHGDGYFQIETEAGMRYARNGHFRLDQTGMLVNSQGYAVMDDRDQPIVFAPNETRVEVASDGTVSTE
NGRVARLKVVKFENDQQMRKAGDSLYETTQEPEVVQSPHVAQGMMEESNVQPVLEMTRMTQILREYQGVQKMLDAEHDRQ
LKAIQALGFTKTN
>Mature_252_residues
PTRIETMQNTSYIALSRQAALWRQMEVVANNMANANTPAFKGEEMMFREFLVPTRSSERAVGGKLSFVQDVGVLRDTREG
PLTKTDNPLDFALHGDGYFQIETEAGMRYARNGHFRLDQTGMLVNSQGYAVMDDRDQPIVFAPNETRVEVASDGTVSTEN
GRVARLKVVKFENDQQMRKAGDSLYETTQEPEVVQSPHVAQGMMEESNVQPVLEMTRMTQILREYQGVQKMLDAEHDRQL
KAIQALGFTKTN

Specific function: Unknown

COG id: COG4786

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787318, Length=246, Percent_Identity=31.7073170731707, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787317, Length=265, Percent_Identity=28.6792452830189, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 28559; Mature: 28427

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00588 FLAGELLA_BB_ROD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTRIETMQNTSYIALSRQAALWRQMEVVANNMANANTPAFKGEEMMFREFLVPTRSSER
CCCCCCHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC
AVGGKLSFVQDVGVLRDTREGPLTKTDNPLDFALHGDGYFQIETEAGMRYARNGHFRLDQ
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHHHCCCCEEECC
TGMLVNSQGYAVMDDRDQPIVFAPNETRVEVASDGTVSTENGRVARLKVVKFENDQQMRK
CCEEECCCCEEEECCCCCCEEECCCCCEEEEECCCEEECCCCCEEEEEEEEECCHHHHHH
AGDSLYETTQEPEVVQSPHVAQGMMEESNVQPVLEMTRMTQILREYQGVQKMLDAEHDRQ
CCHHHHHCCCCCHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LKAIQALGFTKTN
HHHHHHHCCCCCC
>Mature Secondary Structure 
PTRIETMQNTSYIALSRQAALWRQMEVVANNMANANTPAFKGEEMMFREFLVPTRSSER
CCCCCHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC
AVGGKLSFVQDVGVLRDTREGPLTKTDNPLDFALHGDGYFQIETEAGMRYARNGHFRLDQ
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHHHCCCCEEECC
TGMLVNSQGYAVMDDRDQPIVFAPNETRVEVASDGTVSTENGRVARLKVVKFENDQQMRK
CCEEECCCCEEEECCCCCCEEECCCCCEEEEECCCEEECCCCCEEEEEEEEECCHHHHHH
AGDSLYETTQEPEVVQSPHVAQGMMEESNVQPVLEMTRMTQILREYQGVQKMLDAEHDRQ
CCHHHHHCCCCCHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LKAIQALGFTKTN
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1474584; 11259647 [H]