| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is yhiN [H]
Identifier: 83312554
GI number: 83312554
Start: 3791338
End: 3792528
Strand: Reverse
Name: yhiN [H]
Synonym: amb3455
Alternate gene names: 83312554
Gene position: 3792528-3791338 (Counterclockwise)
Preceding gene: 83312555
Following gene: 83312543
Centisome position: 76.35
GC content: 69.19
Gene sequence:
>1191_bases ATGAGCCATTCTTCCTCCGCCTTCGACGTGATCGTGATCGGTGCCGGTGCCGCCGGGCTGATGTGCGCCGCCGTGGCCGC CGGGCGCGGCAAGCGGGTGGTGGTGCTGGACCACAACGACCAGCCGGGGAGGAAAATCCTCATCTCCGGCGGCGGCAAGT GCAACTTCACCAACCGCACCGTCACCCCGGCCCAGTATTTATCGGCCAATCCCCATTACGCCACCTCGGCGCTGAAGCGT TTCGGCCCCGCCGATTTCCTGGACCTTATGAAGCGCCACCGCATCGCCTGGCACGAGCGCGAGCACGGGCAGCTGTTCTG CGACAATTCGGCCGCCGATATCGTCGCCATGCTGCTGTCGGAATGCGGCGCGGGCGGGGTGGAGGTGGTGCTGGAGGCCA AACTCGGCGCGGTGACCGGCGAGGGGCCGTTCCAGGTGGCCACCAGCCGGGGCGGCTATTGCGCCCCCGCCCTGGTGATC GCCACCGGCGGGCTATCGGTGCCGAAGATCGGCGCCACCGGCTTCGCCCATACCCTGGCTGGGCGTTATGGCCTGTCGGT GGTGCCTCCCCGGCCCGGACTGGTGCCGCTGACCTTCACCGGGGCCGATCTCGACCTCATGCGTGATCTGGCGGGCATCG CCGTGCCGGCTGAACTCCGCTTCGGCAAGACCCGCTTCCGCGAGGCCCTGCTGTTCACCCATCGCGGTCTGTCGGGACCG GCGGTGCTGCAGATCAGTTCATACTGGCTGACCGGTCAGCCGATCATGGTCAATCTGTTGCCCGACCTGGATGCCAATGC CCGCCTGCTGGAGCGCAAGGCCGCCCGGCCCAATGCCCAGGTGGAGACCGTCGTGGGCGAATTGCTGCCCGCCCGCCTGG CCCGCGCCCTGACGGAGCGGGCCGGTCTGCTCGGTCGACCGATCGGTCAGTCGACGAATGCCGCCCTGGCCGGGCTGGCC CGCCTGCTGTCGGAATGGCCGCTGGTTCCGGCGGGCAGCGAGGGCTACCGCACCGCCGAGGTCACCCTGGGCGGCGTTGA CACCGCCGGGCTGTCCTCTAAGACCATGGCGGCCAAGTCCCATCCCGGCCTGCATTTCATCGGCGAGGCGGTGGACGTGG CCGGCTGGCTGGGCGGCTATAACTTCCAGTGGGCGTGGTCGTCGGGTTGGGTGGCGGGGATGAGCGTGTAG
Upstream 100 bases:
>100_bases GCCGATCTGACCGCCTCGGGCCTGGGCGACGGACTGACCCTGGGCCGCGCGGTCTACCGCCTGCTGGAGTGGCGCGACCG GATGGGGTAGAAGTCCGGCC
Downstream 100 bases:
>100_bases AGGCTGACGCGGGGCTCCCGCCCCGACCCCGGTTGGAGGAAACCTCCAAACCTCCCTTATTTCTGAAAATAAAGGGGGTT TGGGGCATCGCCCCAAATGG
Product: flavoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 396; Mature: 395
Protein sequence:
>396_residues MSHSSSAFDVIVIGAGAAGLMCAAVAAGRGKRVVVLDHNDQPGRKILISGGGKCNFTNRTVTPAQYLSANPHYATSALKR FGPADFLDLMKRHRIAWHEREHGQLFCDNSAADIVAMLLSECGAGGVEVVLEAKLGAVTGEGPFQVATSRGGYCAPALVI ATGGLSVPKIGATGFAHTLAGRYGLSVVPPRPGLVPLTFTGADLDLMRDLAGIAVPAELRFGKTRFREALLFTHRGLSGP AVLQISSYWLTGQPIMVNLLPDLDANARLLERKAARPNAQVETVVGELLPARLARALTERAGLLGRPIGQSTNAALAGLA RLLSEWPLVPAGSEGYRTAEVTLGGVDTAGLSSKTMAAKSHPGLHFIGEAVDVAGWLGGYNFQWAWSSGWVAGMSV
Sequences:
>Translated_396_residues MSHSSSAFDVIVIGAGAAGLMCAAVAAGRGKRVVVLDHNDQPGRKILISGGGKCNFTNRTVTPAQYLSANPHYATSALKR FGPADFLDLMKRHRIAWHEREHGQLFCDNSAADIVAMLLSECGAGGVEVVLEAKLGAVTGEGPFQVATSRGGYCAPALVI ATGGLSVPKIGATGFAHTLAGRYGLSVVPPRPGLVPLTFTGADLDLMRDLAGIAVPAELRFGKTRFREALLFTHRGLSGP AVLQISSYWLTGQPIMVNLLPDLDANARLLERKAARPNAQVETVVGELLPARLARALTERAGLLGRPIGQSTNAALAGLA RLLSEWPLVPAGSEGYRTAEVTLGGVDTAGLSSKTMAAKSHPGLHFIGEAVDVAGWLGGYNFQWAWSSGWVAGMSV >Mature_395_residues SHSSSAFDVIVIGAGAAGLMCAAVAAGRGKRVVVLDHNDQPGRKILISGGGKCNFTNRTVTPAQYLSANPHYATSALKRF GPADFLDLMKRHRIAWHEREHGQLFCDNSAADIVAMLLSECGAGGVEVVLEAKLGAVTGEGPFQVATSRGGYCAPALVIA TGGLSVPKIGATGFAHTLAGRYGLSVVPPRPGLVPLTFTGADLDLMRDLAGIAVPAELRFGKTRFREALLFTHRGLSGPA VLQISSYWLTGQPIMVNLLPDLDANARLLERKAARPNAQVETVVGELLPARLARALTERAGLLGRPIGQSTNAALAGLAR LLSEWPLVPAGSEGYRTAEVTLGGVDTAGLSSKTMAAKSHPGLHFIGEAVDVAGWLGGYNFQWAWSSGWVAGMSV
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0933 [H]
Homologues:
Organism=Escherichia coli, GI2367234, Length=391, Percent_Identity=50.6393861892583, Blast_Score=373, Evalue=1e-104,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 - InterPro: IPR023166 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 41420; Mature: 41289
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHSSSAFDVIVIGAGAAGLMCAAVAAGRGKRVVVLDHNDQPGRKILISGGGKCNFTNRT CCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCEEECCCCC VTPAQYLSANPHYATSALKRFGPADFLDLMKRHRIAWHEREHGQLFCDNSAADIVAMLLS CCHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHH ECGAGGVEVVLEAKLGAVTGEGPFQVATSRGGYCAPALVIATGGLSVPKIGATGFAHTLA HCCCCCEEEEEEEECCEECCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHH GRYGLSVVPPRPGLVPLTFTGADLDLMRDLAGIAVPAELRFGKTRFREALLFTHRGLSGP HCCCCEEECCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCCC AVLQISSYWLTGQPIMVNLLPDLDANARLLERKAARPNAQVETVVGELLPARLARALTER EEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH AGLLGRPIGQSTNAALAGLARLLSEWPLVPAGSEGYRTAEVTLGGVDTAGLSSKTMAAKS HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEECCC HPGLHFIGEAVDVAGWLGGYNFQWAWSSGWVAGMSV CCCCEEHHHHHHHHHHHCCCCEEEEECCCCEEECCC >Mature Secondary Structure SHSSSAFDVIVIGAGAAGLMCAAVAAGRGKRVVVLDHNDQPGRKILISGGGKCNFTNRT CCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCEEECCCCC VTPAQYLSANPHYATSALKRFGPADFLDLMKRHRIAWHEREHGQLFCDNSAADIVAMLLS CCHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHH ECGAGGVEVVLEAKLGAVTGEGPFQVATSRGGYCAPALVIATGGLSVPKIGATGFAHTLA HCCCCCEEEEEEEECCEECCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHH GRYGLSVVPPRPGLVPLTFTGADLDLMRDLAGIAVPAELRFGKTRFREALLFTHRGLSGP HCCCCEEECCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCCC AVLQISSYWLTGQPIMVNLLPDLDANARLLERKAARPNAQVETVVGELLPARLARALTER EEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH AGLLGRPIGQSTNAALAGLARLLSEWPLVPAGSEGYRTAEVTLGGVDTAGLSSKTMAAKS HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEECCC HPGLHFIGEAVDVAGWLGGYNFQWAWSSGWVAGMSV CCCCEEHHHHHHHHHHHCCCCEEEEECCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]