| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is 83312375
Identifier: 83312375
GI number: 83312375
Start: 3548880
End: 3550673
Strand: Reverse
Name: 83312375
Synonym: amb3276
Alternate gene names: NA
Gene position: 3550673-3548880 (Counterclockwise)
Preceding gene: 83312376
Following gene: 83312374
Centisome position: 71.48
GC content: 63.99
Gene sequence:
>1794_bases ATGACCGCCAATCTGTCTCGCTTGGCCCGCCTGATGGCCGCCGTGTCCACCGCCGCCCTGCTGTCGGCCTGCGCGGTGAC ACCGACGCCGTTCACCGCCGACGAGTTCTCGGCCAAGGCCAAGGCCGACCGCGCCGCCATGTTCGAGGGCCAAGAGGTGA TGGCCAAGCCGTTGACCCTGGCGGACGCGGTGGCCCGCGTGCTGAAGTACAATCTGGATAAGCGGTCCAAGATGATGGAC GAAGCCCTGGCGCTGGGCCAGACCAGTCTCGACCGCTTCGACCTTCTGCCCAAGCTGGCGGCAAATGCGGGCTATACCGA GCGCTCGGCCCCCAACGCCACAAGGTCGCGGGATCTGTATACCCAGACCACCAGCACCTCGAACCCCAGCTATTCGGCGG ACCGTTTTTCCATCACCAATGATCTGGGTCTGACCTGGAACATCCTGGATTTCGGCGTCAGCTACTTCACCGCCCACCAG AATGCCGACCGGGCGCTCATCGCCCAGGAAAAGCGGCGCAAGACCGTCAACAATCTGGTCCAGGAGGTCCGCTTCACCTT CTGGCGGGCCGCCGCCGCCCAGACCCTGAAGGGCAAGGTCACCGAGGTGATCGCCAATGCCGAAAAGGCGTTGAAGGATT CCGAGCGGGTCGAGGCCGAAAAGCTGAAGAACCCCACCGAGACGCTTCGTATCCAAAAGACCCTGCTGGAAAGCATCCGC CAGTTGGAGGCCATCGACCAGGAGCTGACCACCGCCAAGGCCGAGCTTGCGGCGCTGATCAACGTGGCGCCAGGCAGCGA CTTCAAGCTGGACGTGCCTGAAAAGGGCGGCATGACCATCCCCGCCTGGGACATGCCCATCGAGCAGATGGAAGAGGCGG CGCTGATCAACAACCCCGATCTACGGGAACAGGATTATCAGAGCCGCATCGCCATTGACGATACCCACAAGGAAATCCTG AAGCTGCTGCCGGGCGTGACGCTGTCCTTCTCGCGCCAGTACGATTCCAACTCGTTCCTGATGGAGAACCGCTGGAACGA TGTGGGCACCAAGGTCACCTGGAACCTGATCAACCTGCTATCGGCCCCGGATCGGCTGGCCCATGCCGACAGTGCCGAGA AGGTTGCCGACGCCAAGCGCATCGCGTTGCGCATGGCGGTCTTGGCCCAGGTCCATGTGATCTCGCATCAGTTCGCCAGC GCCACCAAGCAGTTCGAGCGAGCCGACAAGCTGTGGGGCATCGAGACCCGTCTGGCCGAAGCCTCGGGCAACCAGCAGCG CGGCGGCACCCAGAACGAGATCGAGAGGATCAGCACCGAGACCTCGGCCATCGCCGCCGAACTACGCCGTTTCCAGACCT ATGCCCAGATGCAGTCGGCCTATGGCAAGCTGCAAGCCACCATCGGCGCCGATCCGGTGCCGGAGCGGGTGGCGTCGCAC TCGCTGGAAGGCTTGTCGGGAGCCATCGTCCTGGCCATGCCGCCGGTGGTGAAGGTCGATGCCGTGCCGCAGGCCGCTCC CGCCGTCATCGAAGCCGTGAAGCCTGATGTTTCGACCGAACCTGAACAGCGCGACGTGGTTGCCGATGCTCTGGGCTGGT TGGGCCGCACCATTGCCGACAAGGTCCAGGAACTCTCCGCCCCGACCAAGGAGGCCACAGCTCCGACTGTCCAAGCACCT CCGCCCGTGACGGTGCCGGTTTCCGTGACCGTTGATCCCGCTGCCTCCCAGGTCGCTCAGGCCAATCCGCCAGATCGCCC TATCGACTGGTTGGGGCGCCCCATCAACTGGTAG
Upstream 100 bases:
>100_bases TCCGCGACAAGCCGACGGGCAAGATCGCCTTCACCCAACAACTCAAGATGGCCGCGCGTAACGCCGCCATCCGCTTTTCC TAAGACCAGGGGATAATCAC
Downstream 100 bases:
>100_bases GCGGCCCCAGTTATCGCGCCAAAAGGGAGGGGCGGAATGGACTTCATCCAAGACTTTGGTCACTGGCTCGCCTCCGCCCC TCCCTTCATTCCTGATCGGG
Product: Outer membrane protein
Products: NA
Alternate protein names: Outer Membrane Protein; Efflux Outer Membrane Protein; Outer Membrane Protein-Like; Outer Membrane Efflux Protein Superfamily
Number of amino acids: Translated: 597; Mature: 596
Protein sequence:
>597_residues MTANLSRLARLMAAVSTAALLSACAVTPTPFTADEFSAKAKADRAAMFEGQEVMAKPLTLADAVARVLKYNLDKRSKMMD EALALGQTSLDRFDLLPKLAANAGYTERSAPNATRSRDLYTQTTSTSNPSYSADRFSITNDLGLTWNILDFGVSYFTAHQ NADRALIAQEKRRKTVNNLVQEVRFTFWRAAAAQTLKGKVTEVIANAEKALKDSERVEAEKLKNPTETLRIQKTLLESIR QLEAIDQELTTAKAELAALINVAPGSDFKLDVPEKGGMTIPAWDMPIEQMEEAALINNPDLREQDYQSRIAIDDTHKEIL KLLPGVTLSFSRQYDSNSFLMENRWNDVGTKVTWNLINLLSAPDRLAHADSAEKVADAKRIALRMAVLAQVHVISHQFAS ATKQFERADKLWGIETRLAEASGNQQRGGTQNEIERISTETSAIAAELRRFQTYAQMQSAYGKLQATIGADPVPERVASH SLEGLSGAIVLAMPPVVKVDAVPQAAPAVIEAVKPDVSTEPEQRDVVADALGWLGRTIADKVQELSAPTKEATAPTVQAP PPVTVPVSVTVDPAASQVAQANPPDRPIDWLGRPINW
Sequences:
>Translated_597_residues MTANLSRLARLMAAVSTAALLSACAVTPTPFTADEFSAKAKADRAAMFEGQEVMAKPLTLADAVARVLKYNLDKRSKMMD EALALGQTSLDRFDLLPKLAANAGYTERSAPNATRSRDLYTQTTSTSNPSYSADRFSITNDLGLTWNILDFGVSYFTAHQ NADRALIAQEKRRKTVNNLVQEVRFTFWRAAAAQTLKGKVTEVIANAEKALKDSERVEAEKLKNPTETLRIQKTLLESIR QLEAIDQELTTAKAELAALINVAPGSDFKLDVPEKGGMTIPAWDMPIEQMEEAALINNPDLREQDYQSRIAIDDTHKEIL KLLPGVTLSFSRQYDSNSFLMENRWNDVGTKVTWNLINLLSAPDRLAHADSAEKVADAKRIALRMAVLAQVHVISHQFAS ATKQFERADKLWGIETRLAEASGNQQRGGTQNEIERISTETSAIAAELRRFQTYAQMQSAYGKLQATIGADPVPERVASH SLEGLSGAIVLAMPPVVKVDAVPQAAPAVIEAVKPDVSTEPEQRDVVADALGWLGRTIADKVQELSAPTKEATAPTVQAP PPVTVPVSVTVDPAASQVAQANPPDRPIDWLGRPINW >Mature_596_residues TANLSRLARLMAAVSTAALLSACAVTPTPFTADEFSAKAKADRAAMFEGQEVMAKPLTLADAVARVLKYNLDKRSKMMDE ALALGQTSLDRFDLLPKLAANAGYTERSAPNATRSRDLYTQTTSTSNPSYSADRFSITNDLGLTWNILDFGVSYFTAHQN ADRALIAQEKRRKTVNNLVQEVRFTFWRAAAAQTLKGKVTEVIANAEKALKDSERVEAEKLKNPTETLRIQKTLLESIRQ LEAIDQELTTAKAELAALINVAPGSDFKLDVPEKGGMTIPAWDMPIEQMEEAALINNPDLREQDYQSRIAIDDTHKEILK LLPGVTLSFSRQYDSNSFLMENRWNDVGTKVTWNLINLLSAPDRLAHADSAEKVADAKRIALRMAVLAQVHVISHQFASA TKQFERADKLWGIETRLAEASGNQQRGGTQNEIERISTETSAIAAELRRFQTYAQMQSAYGKLQATIGADPVPERVASHS LEGLSGAIVLAMPPVVKVDAVPQAAPAVIEAVKPDVSTEPEQRDVVADALGWLGRTIADKVQELSAPTKEATAPTVQAPP PVTVPVSVTVDPAASQVAQANPPDRPIDWLGRPINW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65202; Mature: 65070
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTANLSRLARLMAAVSTAALLSACAVTPTPFTADEFSAKAKADRAAMFEGQEVMAKPLTL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCHHH ADAVARVLKYNLDKRSKMMDEALALGQTSLDRFDLLPKLAANAGYTERSAPNATRSRDLY HHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE TQTTSTSNPSYSADRFSITNDLGLTWNILDFGVSYFTAHQNADRALIAQEKRRKTVNNLV EECCCCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH QEVRFTFWRAAAAQTLKGKVTEVIANAEKALKDSERVEAEKLKNPTETLRIQKTLLESIR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH QLEAIDQELTTAKAELAALINVAPGSDFKLDVPEKGGMTIPAWDMPIEQMEEAALINNPD HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCC LREQDYQSRIAIDDTHKEILKLLPGVTLSFSRQYDSNSFLMENRWNDVGTKVTWNLINLL CCCHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHH SAPDRLAHADSAEKVADAKRIALRMAVLAQVHVISHQFASATKQFERADKLWGIETRLAE CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH ASGNQQRGGTQNEIERISTETSAIAAELRRFQTYAQMQSAYGKLQATIGADPVPERVASH CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHCCCCCCCHHHHHHH SLEGLSGAIVLAMPPVVKVDAVPQAAPAVIEAVKPDVSTEPEQRDVVADALGWLGRTIAD CCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH KVQELSAPTKEATAPTVQAPPPVTVPVSVTVDPAASQVAQANPPDRPIDWLGRPINW HHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHCCCCCCCCHHHCCCCCCC >Mature Secondary Structure TANLSRLARLMAAVSTAALLSACAVTPTPFTADEFSAKAKADRAAMFEGQEVMAKPLTL CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCHHH ADAVARVLKYNLDKRSKMMDEALALGQTSLDRFDLLPKLAANAGYTERSAPNATRSRDLY HHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE TQTTSTSNPSYSADRFSITNDLGLTWNILDFGVSYFTAHQNADRALIAQEKRRKTVNNLV EECCCCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH QEVRFTFWRAAAAQTLKGKVTEVIANAEKALKDSERVEAEKLKNPTETLRIQKTLLESIR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH QLEAIDQELTTAKAELAALINVAPGSDFKLDVPEKGGMTIPAWDMPIEQMEEAALINNPD HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCC LREQDYQSRIAIDDTHKEILKLLPGVTLSFSRQYDSNSFLMENRWNDVGTKVTWNLINLL CCCHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHH SAPDRLAHADSAEKVADAKRIALRMAVLAQVHVISHQFASATKQFERADKLWGIETRLAE CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH ASGNQQRGGTQNEIERISTETSAIAAELRRFQTYAQMQSAYGKLQATIGADPVPERVASH CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHCCCCCCCHHHHHHH SLEGLSGAIVLAMPPVVKVDAVPQAAPAVIEAVKPDVSTEPEQRDVVADALGWLGRTIAD CCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH KVQELSAPTKEATAPTVQAPPPVTVPVSVTVDPAASQVAQANPPDRPIDWLGRPINW HHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHCCCCCCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA