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The map label for this gene is yddE [C]

Identifier: 83312295

GI number: 83312295

Start: 3465301

End: 3466089

Strand: Reverse

Name: yddE [C]

Synonym: amb3196

Alternate gene names: 83312295

Gene position: 3466089-3465301 (Counterclockwise)

Preceding gene: 83312296

Following gene: 162319784

Centisome position: 69.78

GC content: 69.84

Gene sequence:

>789_bases
ATGAGCGCGCTTCCCTTCTGGCACGTGGACGCCTTTGTCGAGGACGCGCCGTTCTCCGGAAATCCGGCGGCGGTGGTGGT
GCTGCCCCAATGGCCCGACGACGCCTGGATGCAGGCGGTAGCGGGTCAGAACGCCCTGTCGGAAACCGCCTTCCTGGTCA
AGGAGGCGGAGGGCTGGCGGGTGCGCTGGTTCACCCCCAGGATCGAGGTGGATCTGTGCGGCCACGCCACCCTGGCCTCG
GCCTGGGTGGTGCTGAACCATGTGGAGCCGGGAGAGCGGGTCGTGTTCGCCTCCAGGAGCGGGCCGCTGGCCGTCATCCG
CGACGGCGATCGCCTGGTACTGGATTTTCCCGCCAACCCGCCGCGTCCCGCCGTGTTTCCCGAGGGACTCGACCGTATCC
TGGGGGCTCCGGCGCGTGAGGTACTGGCCACCCGTGACCATCTGCTGTGCGTGCTCGACGATGCCGACCGTGTGTCGGCG
CTGGTGCCCGACATGGCCGGGGTGGTGCAGTTGAACCGATGGGGGCTGATCGTCACCGCGCCGGGCGGCGGCGGCGTGGA
TTTCGTCTCGCGCTTTTTCGCCCCGCGCAAAGGCGTGGACGAGGACCCGGTGACCGGCTCGGCTCATTGCGTGCTGGCGC
CCTTCTGGGCCCGGCGCCTGGACAAGGCCATGCTGACGGCGCGGCAGCTGTCTCGGCGCGGCGGCACGCTGTGGCTGGAG
AACCGGGGAGAGCGGGTGCTGATCGGCGGCCGCGCGCGGCCGTTCGTTCAGGGCCAATTGATACTCTGA

Upstream 100 bases:

>100_bases
GGGCCAGGGCCTATCTGGTCAGGGCCATCGAGACCGCCCCCGGCCTGGGAAGCGGCCACGGCCCCCTCAACCATGGGCAC
ACGGTCAAGGAGTTTCAGGC

Downstream 100 bases:

>100_bases
GGGCTGCCCCTCACCTCAGCCGTGGGCGTCCGCGGGAGGGGCGCCCAGGGTGCGGATGATGGCGCGGGTCAGGAGGTGAA
AGTCCACCGGCTTGACCAAC

Product: epimerase, PhzC/PhzF-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSALPFWHVDAFVEDAPFSGNPAAVVVLPQWPDDAWMQAVAGQNALSETAFLVKEAEGWRVRWFTPRIEVDLCGHATLAS
AWVVLNHVEPGERVVFASRSGPLAVIRDGDRLVLDFPANPPRPAVFPEGLDRILGAPAREVLATRDHLLCVLDDADRVSA
LVPDMAGVVQLNRWGLIVTAPGGGGVDFVSRFFAPRKGVDEDPVTGSAHCVLAPFWARRLDKAMLTARQLSRRGGTLWLE
NRGERVLIGGRARPFVQGQLIL

Sequences:

>Translated_262_residues
MSALPFWHVDAFVEDAPFSGNPAAVVVLPQWPDDAWMQAVAGQNALSETAFLVKEAEGWRVRWFTPRIEVDLCGHATLAS
AWVVLNHVEPGERVVFASRSGPLAVIRDGDRLVLDFPANPPRPAVFPEGLDRILGAPAREVLATRDHLLCVLDDADRVSA
LVPDMAGVVQLNRWGLIVTAPGGGGVDFVSRFFAPRKGVDEDPVTGSAHCVLAPFWARRLDKAMLTARQLSRRGGTLWLE
NRGERVLIGGRARPFVQGQLIL
>Mature_261_residues
SALPFWHVDAFVEDAPFSGNPAAVVVLPQWPDDAWMQAVAGQNALSETAFLVKEAEGWRVRWFTPRIEVDLCGHATLASA
WVVLNHVEPGERVVFASRSGPLAVIRDGDRLVLDFPANPPRPAVFPEGLDRILGAPAREVLATRDHLLCVLDDADRVSAL
VPDMAGVVQLNRWGLIVTAPGGGGVDFVSRFFAPRKGVDEDPVTGSAHCVLAPFWARRLDKAMLTARQLSRRGGTLWLEN
RGERVLIGGRARPFVQGQLIL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=285, Percent_Identity=38.5964912280702, Blast_Score=145, Evalue=4e-35,
Organism=Homo sapiens, GI74316009, Length=252, Percent_Identity=38.0952380952381, Blast_Score=132, Evalue=4e-31,
Organism=Escherichia coli, GI1787737, Length=283, Percent_Identity=30.0353356890459, Blast_Score=76, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17542160, Length=315, Percent_Identity=29.8412698412698, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17542154, Length=315, Percent_Identity=29.8412698412698, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17542158, Length=311, Percent_Identity=28.9389067524116, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17542152, Length=311, Percent_Identity=28.9389067524116, Blast_Score=109, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 28592; Mature: 28461

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALPFWHVDAFVEDAPFSGNPAAVVVLPQWPDDAWMQAVAGQNALSETAFLVKEAEGWR
CCCCCEEEHHHEEECCCCCCCCEEEEEEECCCCHHHHHHHHCCCHHHHHEEEEEECCCCE
VRWFTPRIEVDLCGHATLASAWVVLNHVEPGERVVFASRSGPLAVIRDGDRLVLDFPANP
EEEECCEEEEEECCCHHHHEEEEEEECCCCCCEEEEEECCCCEEEEECCCEEEEECCCCC
PRPAVFPEGLDRILGAPAREVLATRDHLLCVLDDADRVSALVPDMAGVVQLNRWGLIVTA
CCCCCCHHHHHHHHCCCHHHHHHCCCCEEEEECCCHHHHHHHCCCCCEEEEECCEEEEEC
PGGGGVDFVSRFFAPRKGVDEDPVTGSAHCVLAPFWARRLDKAMLTARQLSRRGGTLWLE
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCEEEEE
NRGERVLIGGRARPFVQGQLIL
CCCCEEEECCCCCCEECEEEEC
>Mature Secondary Structure 
SALPFWHVDAFVEDAPFSGNPAAVVVLPQWPDDAWMQAVAGQNALSETAFLVKEAEGWR
CCCCEEEHHHEEECCCCCCCCEEEEEEECCCCHHHHHHHHCCCHHHHHEEEEEECCCCE
VRWFTPRIEVDLCGHATLASAWVVLNHVEPGERVVFASRSGPLAVIRDGDRLVLDFPANP
EEEECCEEEEEECCCHHHHEEEEEEECCCCCCEEEEEECCCCEEEEECCCEEEEECCCCC
PRPAVFPEGLDRILGAPAREVLATRDHLLCVLDDADRVSALVPDMAGVVQLNRWGLIVTA
CCCCCCHHHHHHHHCCCHHHHHHCCCCEEEEECCCHHHHHHHCCCCCEEEEECCEEEEEC
PGGGGVDFVSRFFAPRKGVDEDPVTGSAHCVLAPFWARRLDKAMLTARQLSRRGGTLWLE
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCEEEEE
NRGERVLIGGRARPFVQGQLIL
CCCCEEEECCCCCCEECEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]