| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is menA [H]
Identifier: 83312174
GI number: 83312174
Start: 3324814
End: 3325644
Strand: Reverse
Name: menA [H]
Synonym: amb3075
Alternate gene names: 83312174
Gene position: 3325644-3324814 (Counterclockwise)
Preceding gene: 83312175
Following gene: 83312173
Centisome position: 66.95
GC content: 72.2
Gene sequence:
>831_bases ATGAAGCTGGAGTCCGGCCAGCCCGAAAAGCCGTCCCTGGTCATCCCCGGCCCCGATGCCAGCCGCGCCGACCAGCCGGA CGGCTGGCGGCTGTGGTGGCTGGCCATCCGGCCCAAGACCCTGACCATTTCCGTGGCCCCGGTGCTGGCGGGCGGCGCCC TGGCCTTCGCCGATGCCGGACAGTTGGACCCGCGTCCCCTGGCCGCCGCGCTGCTGGGCGCCCTGGCCATTCAGGCGGGG ACCAATCTCTACAACGATGTGGGCGATGCCCTGCGCGGCGGCGACCAGCCCCTGCGTCAGGGGCCGCCGCGCGTCACCGC GCTGGGCTGGGCCACCCCCGAGCGGGTCAAGCGCGCCGCCCTGGTCTGCTTCGCCCTGGCCGCCCTGGTGGGGCTTTATC TCGCCTGGCTGGGCGGCTGGCCGGTGGTCGCCCTGGGCCTCGCCTCGCTGCTGGCCGGCTGGGCCTATTCCAGCGGTCCC CGGCCCATCGCCTATACTCCCTCCGGCGAGCTCTTCGTCATCGCCTTCTTCGGCATCGGCGCGGTGGGGGGGACGTATTA CCTTCAGACACTGTCATTGACCGGTCAGTCGATCATGGTCGGCGCCGCCATGGGGGCGGTGGCCGCGGCGGTGCTGCTGG CCAATAATTACCGCGACATGGAGCCCGACCGTCTGGCCGGGCGCCGCACCCTGGCCATTCGGGTCGGCATCGAGGCCTCC AGGCGGTCTACGGCATGCTGCTGCTGTCGCCCATCGCGCTTTTGGCCTCGCCCCTGGGGCCGAAGGGCGGCTGGCTGTGC CTGGGGGCCTTGCCCTTCGCCCTGTGGCTGA
Upstream 100 bases:
>100_bases AGATGGCCGGTCTGATGGCGGATGCGGGATTCCAGCGCGTCGTCTGGCGCAATCTGTCGGCGGGCATCGCCTGCCTGCAT TCCGGCGTGAAGCCCGCGTC
Downstream 100 bases:
>100_bases TCCTGCGCTTTGCCACCCAGGCCCGGGGTCCGGCCTTCAACGCCATCCTGGCCTCGACCGCCCGCTTCCAGTTGCTGCTG GCGGGGCTGCTTGGGGTCGG
Product: 1,4-dihydroxy-2-naphthoate octaprenyltransferase
Products: NA
Alternate protein names: DHNA-octaprenyltransferase [H]
Number of amino acids: Translated: 276; Mature: 276
Protein sequence:
>276_residues MKLESGQPEKPSLVIPGPDASRADQPDGWRLWWLAIRPKTLTISVAPVLAGGALAFADAGQLDPRPLAAALLGALAIQAG TNLYNDVGDALRGGDQPLRQGPPRVTALGWATPERVKRAALVCFALAALVGLYLAWLGGWPVVALGLASLLAGWAYSSGP RPIAYTPSGELFVIAFFGIGAVGGTYYLQTLSLTGQSIMVGAAMGAVAAAVLLANNYRDMEPDRLAGRRTLAIRVGIEAS RRSTACCCCRPSRFWPRPWGRRAAGCAWGPCPSPCG
Sequences:
>Translated_276_residues MKLESGQPEKPSLVIPGPDASRADQPDGWRLWWLAIRPKTLTISVAPVLAGGALAFADAGQLDPRPLAAALLGALAIQAG TNLYNDVGDALRGGDQPLRQGPPRVTALGWATPERVKRAALVCFALAALVGLYLAWLGGWPVVALGLASLLAGWAYSSGP RPIAYTPSGELFVIAFFGIGAVGGTYYLQTLSLTGQSIMVGAAMGAVAAAVLLANNYRDMEPDRLAGRRTLAIRVGIEAS RRSTACCCCRPSRFWPRPWGRRAAGCAWGPCPSPCG >Mature_276_residues MKLESGQPEKPSLVIPGPDASRADQPDGWRLWWLAIRPKTLTISVAPVLAGGALAFADAGQLDPRPLAAALLGALAIQAG TNLYNDVGDALRGGDQPLRQGPPRVTALGWATPERVKRAALVCFALAALVGLYLAWLGGWPVVALGLASLLAGWAYSSGP RPIAYTPSGELFVIAFFGIGAVGGTYYLQTLSLTGQSIMVGAAMGAVAAAVLLANNYRDMEPDRLAGRRTLAIRVGIEAS RRSTACCCCRPSRFWPRPWGRRAAGCAWGPCPSPCG
Specific function: Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to dimethylmenaquinone (DMK). Attaches octaprenylpyrophosphate, a membrane-bound 40-carbon side chain to DHNA. The conversion of DHNA to DMK proceeds in three stages:the removal of the carboxyl group of DHNA
COG id: COG1575
COG function: function code H; 1,4-dihydroxy-2-naphthoate octaprenyltransferase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the menA family [H]
Homologues:
Organism=Homo sapiens, GI7019551, Length=225, Percent_Identity=31.1111111111111, Blast_Score=85, Evalue=7e-17, Organism=Escherichia coli, GI1790365, Length=221, Percent_Identity=38.0090497737557, Blast_Score=129, Evalue=3e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004657 - InterPro: IPR000537 [H]
Pfam domain/function: PF01040 UbiA [H]
EC number: =2.5.1.74 [H]
Molecular weight: Translated: 28920; Mature: 28920
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLESGQPEKPSLVIPGPDASRADQPDGWRLWWLAIRPKTLTISVAPVLAGGALAFADAG CCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECCEEEEEEEHHHHCCCEEEECCCC QLDPRPLAAALLGALAIQAGTNLYNDVGDALRGGDQPLRQGPPRVTALGWATPERVKRAA CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHCCCCCEEEECCCCHHHHHHHH LVCFALAALVGLYLAWLGGWPVVALGLASLLAGWAYSSGPRPIAYTPSGELFVIAFFGIG HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCC AVGGTYYLQTLSLTGQSIMVGAAMGAVAAAVLLANNYRDMEPDRLAGRRTLAIRVGIEAS CCCHHHEEEEHECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCEEEEEEECCCCC RRSTACCCCRPSRFWPRPWGRRAAGCAWGPCPSPCG CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKLESGQPEKPSLVIPGPDASRADQPDGWRLWWLAIRPKTLTISVAPVLAGGALAFADAG CCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECCEEEEEEEHHHHCCCEEEECCCC QLDPRPLAAALLGALAIQAGTNLYNDVGDALRGGDQPLRQGPPRVTALGWATPERVKRAA CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHCCCCCEEEECCCCHHHHHHHH LVCFALAALVGLYLAWLGGWPVVALGLASLLAGWAYSSGPRPIAYTPSGELFVIAFFGIG HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCC AVGGTYYLQTLSLTGQSIMVGAAMGAVAAAVLLANNYRDMEPDRLAGRRTLAIRVGIEAS CCCHHHEEEEHECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCEEEEEEECCCCC RRSTACCCCRPSRFWPRPWGRRAAGCAWGPCPSPCG CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9573170; 8346018; 9278503 [H]