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The map label for this gene is yocS [H]

Identifier: 83312172

GI number: 83312172

Start: 3323844

End: 3324821

Strand: Reverse

Name: yocS [H]

Synonym: amb3073

Alternate gene names: 83312172

Gene position: 3324821-3323844 (Counterclockwise)

Preceding gene: 83312173

Following gene: 83312170

Centisome position: 66.94

GC content: 70.14

Gene sequence:

>978_bases
GTGGCTGATCCTGCGCTTTGCCACCCAGGCCCGGGGTCCGGCCTTCAACGCCATCCTGGCCTCGACCGCCCGCTTCCAGT
TGCTGCTGGCGGGGCTGCTTGGGGTCGGAGTTCTGCTGTGATCACCCAGGCCGCCTTGCCGCTGGCCCTGGCTTTCATCA
TGTTCGCCATGGGCCTGACCATGGATGGGCGCGATTTCCGCGTGGTGTTCGGCAGCCCCAAGGCCCTGGCGGTGGGGCTG
GGAGCCAAGCTGGTGCTGCTGCCGGCCCTGGGGCTGGCCCTGGTGCTGGCTTGGCGGCCGGAACCCGATTTCGCCGTGGG
CATGATCCTGCTGGCCGCCTGTCCCGCCGGGGTGACCTCGGCCCTGCTGACCCATCATGCCGGCGGGCGCATCGCCCTGG
CCGCCACCATCACCGCGCTCACCTCCCTGGCCGCCACCCTGACCGTGCCCCTGCTGGTCAATGTGGGCCTGGCCCTGTTC
GCGGGCTATGACCGGTCGGTCGAGATTCCCGTGGCCAAGATGACCCTGGGCATTTTCCTGGTGGATACGGTGCCGCTGGT
CCTGGGGCTGGTCCTCCAGCGGTCCTGGCCGGGACTGGCCGGGCGCCTGGGCCGCGTGGCCCGCCCGGTGGCTACCTTGC
TGTTCGCCCTGATCGTGGTCGGCGCCTTCGTCAGTCAGCGTCAGGCGCTGATCGACCATGTGGGCGACGTGGTGCCCGCC
GCCCTGATCCTCAATCTGGCCGCCATGACCGGGGCCTGGGCGCTGGGGGCGGCGGCACGCCTGGATCTGGCCGACCGCAT
CGCCGTGGTCATGGAGAACGGGCTGCAGAACGGGGCGCTGGGCATCTTCGTGGCGGTGACGCTGCTGGGCAACCCGGCCA
TGATGGTGCCCAGCATCGTCTACGCCTTCGTCATGAACCTGACGGCCGTCGCGTTCATCCTGGCGGTGAAGCGCCGCCGC
CGGGTGGTCACCGGTTAG

Upstream 100 bases:

>100_bases
CGGTCTACGGCATGCTGCTGCTGTCGCCCATCGCGCTTTTGGCCTCGCCCCTGGGGCCGAAGGGCGGCTGGCTGTGCCTG
GGGGCCTTGCCCTTCGCCCT

Downstream 100 bases:

>100_bases
GGTCGACCACCACCCGTCCCTTGACCTCGCCCTTGAGGATCTTGGCCCCCATCTCGGGCAGATCCACCAGCCGGATTTCG
GTGGTCAGCGAATCCAGCCG

Product: Na+-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MADPALCHPGPGSGLQRHPGLDRPLPVAAGGAAWGRSSAVITQAALPLALAFIMFAMGLTMDGRDFRVVFGSPKALAVGL
GAKLVLLPALGLALVLAWRPEPDFAVGMILLAACPAGVTSALLTHHAGGRIALAATITALTSLAATLTVPLLVNVGLALF
AGYDRSVEIPVAKMTLGIFLVDTVPLVLGLVLQRSWPGLAGRLGRVARPVATLLFALIVVGAFVSQRQALIDHVGDVVPA
ALILNLAAMTGAWALGAAARLDLADRIAVVMENGLQNGALGIFVAVTLLGNPAMMVPSIVYAFVMNLTAVAFILAVKRRR
RVVTG

Sequences:

>Translated_325_residues
MADPALCHPGPGSGLQRHPGLDRPLPVAAGGAAWGRSSAVITQAALPLALAFIMFAMGLTMDGRDFRVVFGSPKALAVGL
GAKLVLLPALGLALVLAWRPEPDFAVGMILLAACPAGVTSALLTHHAGGRIALAATITALTSLAATLTVPLLVNVGLALF
AGYDRSVEIPVAKMTLGIFLVDTVPLVLGLVLQRSWPGLAGRLGRVARPVATLLFALIVVGAFVSQRQALIDHVGDVVPA
ALILNLAAMTGAWALGAAARLDLADRIAVVMENGLQNGALGIFVAVTLLGNPAMMVPSIVYAFVMNLTAVAFILAVKRRR
RVVTG
>Mature_324_residues
ADPALCHPGPGSGLQRHPGLDRPLPVAAGGAAWGRSSAVITQAALPLALAFIMFAMGLTMDGRDFRVVFGSPKALAVGLG
AKLVLLPALGLALVLAWRPEPDFAVGMILLAACPAGVTSALLTHHAGGRIALAATITALTSLAATLTVPLLVNVGLALFA
GYDRSVEIPVAKMTLGIFLVDTVPLVLGLVLQRSWPGLAGRLGRVARPVATLLFALIVVGAFVSQRQALIDHVGDVVPAA
LILNLAAMTGAWALGAAARLDLADRIAVVMENGLQNGALGIFVAVTLLGNPAMMVPSIVYAFVMNLTAVAFILAVKRRRR
VVTG

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33393; Mature: 33261

Theoretical pI: Translated: 11.29; Mature: 11.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADPALCHPGPGSGLQRHPGLDRPLPVAAGGAAWGRSSAVITQAALPLALAFIMFAMGLT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
MDGRDFRVVFGSPKALAVGLGAKLVLLPALGLALVLAWRPEPDFAVGMILLAACPAGVTS
CCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCHHHH
ALLTHHAGGRIALAATITALTSLAATLTVPLLVNVGLALFAGYDRSVEIPVAKMTLGIFL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHH
VDTVPLVLGLVLQRSWPGLAGRLGRVARPVATLLFALIVVGAFVSQRQALIDHVGDVVPA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALILNLAAMTGAWALGAAARLDLADRIAVVMENGLQNGALGIFVAVTLLGNPAMMVPSIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH
YAFVMNLTAVAFILAVKRRRRVVTG
HHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ADPALCHPGPGSGLQRHPGLDRPLPVAAGGAAWGRSSAVITQAALPLALAFIMFAMGLT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
MDGRDFRVVFGSPKALAVGLGAKLVLLPALGLALVLAWRPEPDFAVGMILLAACPAGVTS
CCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCHHHH
ALLTHHAGGRIALAATITALTSLAATLTVPLLVNVGLALFAGYDRSVEIPVAKMTLGIFL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHH
VDTVPLVLGLVLQRSWPGLAGRLGRVARPVATLLFALIVVGAFVSQRQALIDHVGDVVPA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALILNLAAMTGAWALGAAARLDLADRIAVVMENGLQNGALGIFVAVTLLGNPAMMVPSIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH
YAFVMNLTAVAFILAVKRRRRVVTG
HHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]