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The map label for this gene is yqxC [H]

Identifier: 83311999

GI number: 83311999

Start: 3096123

End: 3097544

Strand: Reverse

Name: yqxC [H]

Synonym: amb2900

Alternate gene names: 83311999

Gene position: 3097544-3096123 (Counterclockwise)

Preceding gene: 83312005

Following gene: 83311998

Centisome position: 62.36

GC content: 67.09

Gene sequence:

>1422_bases
ATGGGTGGAGGCATAGAGCATGCCCGGCTCGTCCCACAGGATGTGCTGGGTGCCGTTGCCGTGGTGCACGTCGATGTCGA
CCACCGCCACCCGCTTGAAGCCATGGGCGTCGCGGGCGTGCAGCGCGGCGATGGCCGCGTTGCAGAAGAAGCAGAACCCC
ATGGCGTTGTCGCGCTCGGCATGGTGGCCCGGCGGACGCACGGCGCAAAAGGCGTTGCGCACCTCGCCCTTGGCCACGGC
GTCCACCGCCGCGATGCCGGCCCCGGCGGCCCGCAGCGCCGCCTCGCCCGAATAGCGCGACAGGATGGTGTCGGGATCCA
GGTGGTGGTGCCCGTCGCTGTTGGGCACCGAGTCCAGCACATAGTCGATATGGCTGAGCGGGTGAGCCCGCATCAGTTGT
TCCATGGTGGCATGCGGCGCTTCGTCTCGCAGCAGCATCATGAACTCCTCGCTCTCCAGGGAGGCGAGGACGGCCTTGAT
CCGATCGGCGCATTCGGGGTGATAATCCCCGGTGTCATGCTGCAGACAGACGGGGTGCGTGAACAGCAACGTTGTCATTC
TGGCTTGGACGTCCCGCGTTTATATAAATTTTCTGTATTCTCGGGGAAAGGGGGGGCAATTTCCATCCCTGATTTTTGCA
TGGGACGGCGGCGTATGAGCGCAAAGAAGCGGGTCGATCAATTATTGGTGGAGCGGGGGCTGGTGGAAAGCCGTTCCAAG
GCCCAGGCCCTGGTCATGGCGGGGCTGGTCTACAGCGGCGACCGGCGGGTGGACAAGCCCGGCACCGCCATGGCCGAAGA
CTGCGCCCTGGAGCTCAAGGGCCAGGACCATCCCTGGGTGTCGCGCGGCGGTCTCAAGCTGGCCAAGGCCCTGGAAACCT
TCGGCCTCGATCCCCGGGACAAGGTCGCCATCGACGTCGGCGCCTCCACCGGCGGCTTCACCGACGTGCTGCTGGCCCAC
GGGGCGGCGCGGGTCTATGCCGTGGATGTGGGTCACGGGCAATTGGCCTGGAAGCTGCGCAGCGATTCCCGCGTGGTGGT
GCTGGAGCGCACCAACGCCCGCCATCTGACGGCGGAACAGATCCCCGAGCCGGTGGACATGGTGGTGTGCGACGCCAGCT
TCATCGGGCTGGAGACCGTGCTGCCCGCCGCCCTTTCCCTGGCGCGGCCGGGGGCCTGGGTGGCGGCGCTGATCAAGCCG
CAATTCGAGGTGGGCAAGGGCCGGGTGGGCAAGGGCGGCGTGGTGCGCGAGCCCGAATTGCATGCCGAGGTGTGCGAACG
CATCCACGCCTGGCTGGCGGGTCTGCCCGGCTGGCGGGTGGAGGGCATCACCGAAAGCCCCATCCTCGGCCCCGAGGGCA
ACAAGGAATTCCTCATCGTCGGACGCTACGAGGGCGCGCCATGTGCTCCCGCTTCGAGCTGA

Upstream 100 bases:

>100_bases
AATCGTCGGAATTGGTCCCGGCTGGCAGCGGCACGTTGACCATGATGCCTTCGCCGCCGGTCTCGTCGGCCAGCCCGGTA
TTGGGAAAGGCGTGTTCCTG

Downstream 100 bases:

>100_bases
ATGCCGGGTCCCGTGATCTGATCCGGCGTTTCGGCCTCACCGTCCCGCCGCCCTTTCCCCTGGGGACCGAGAGGCGTCCG
ACCGACGCCGTCCTGGTCAT

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MGGGIEHARLVPQDVLGAVAVVHVDVDHRHPLEAMGVAGVQRGDGRVAEEAEPHGVVALGMVARRTHGAKGVAHLALGHG
VHRRDAGPGGPQRRLARIARQDGVGIQVVVPVAVGHRVQHIVDMAERVSPHQLFHGGMRRFVSQQHHELLALQGGEDGLD
PIGAFGVIIPGVMLQTDGVREQQRCHSGLDVPRLYKFSVFSGKGGAISIPDFCMGRRRMSAKKRVDQLLVERGLVESRSK
AQALVMAGLVYSGDRRVDKPGTAMAEDCALELKGQDHPWVSRGGLKLAKALETFGLDPRDKVAIDVGASTGGFTDVLLAH
GAARVYAVDVGHGQLAWKLRSDSRVVVLERTNARHLTAEQIPEPVDMVVCDASFIGLETVLPAALSLARPGAWVAALIKP
QFEVGKGRVGKGGVVREPELHAEVCERIHAWLAGLPGWRVEGITESPILGPEGNKEFLIVGRYEGAPCAPASS

Sequences:

>Translated_473_residues
MGGGIEHARLVPQDVLGAVAVVHVDVDHRHPLEAMGVAGVQRGDGRVAEEAEPHGVVALGMVARRTHGAKGVAHLALGHG
VHRRDAGPGGPQRRLARIARQDGVGIQVVVPVAVGHRVQHIVDMAERVSPHQLFHGGMRRFVSQQHHELLALQGGEDGLD
PIGAFGVIIPGVMLQTDGVREQQRCHSGLDVPRLYKFSVFSGKGGAISIPDFCMGRRRMSAKKRVDQLLVERGLVESRSK
AQALVMAGLVYSGDRRVDKPGTAMAEDCALELKGQDHPWVSRGGLKLAKALETFGLDPRDKVAIDVGASTGGFTDVLLAH
GAARVYAVDVGHGQLAWKLRSDSRVVVLERTNARHLTAEQIPEPVDMVVCDASFIGLETVLPAALSLARPGAWVAALIKP
QFEVGKGRVGKGGVVREPELHAEVCERIHAWLAGLPGWRVEGITESPILGPEGNKEFLIVGRYEGAPCAPASS
>Mature_472_residues
GGGIEHARLVPQDVLGAVAVVHVDVDHRHPLEAMGVAGVQRGDGRVAEEAEPHGVVALGMVARRTHGAKGVAHLALGHGV
HRRDAGPGGPQRRLARIARQDGVGIQVVVPVAVGHRVQHIVDMAERVSPHQLFHGGMRRFVSQQHHELLALQGGEDGLDP
IGAFGVIIPGVMLQTDGVREQQRCHSGLDVPRLYKFSVFSGKGGAISIPDFCMGRRRMSAKKRVDQLLVERGLVESRSKA
QALVMAGLVYSGDRRVDKPGTAMAEDCALELKGQDHPWVSRGGLKLAKALETFGLDPRDKVAIDVGASTGGFTDVLLAHG
AARVYAVDVGHGQLAWKLRSDSRVVVLERTNARHLTAEQIPEPVDMVVCDASFIGLETVLPAALSLARPGAWVAALIKPQ
FEVGKGRVGKGGVVREPELHAEVCERIHAWLAGLPGWRVEGITESPILGPEGNKEFLIVGRYEGAPCAPASS

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 50436; Mature: 50305

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGGIEHARLVPQDVLGAVAVVHVDVDHRHPLEAMGVAGVQRGDGRVAEEAEPHGVVALG
CCCCCCHHHCCCHHHHCEEEEEEEECCCCCCHHHHCCCCEECCCCCCCCCCCCCCEEEEH
MVARRTHGAKGVAHLALGHGVHRRDAGPGGPQRRLARIARQDGVGIQVVVPVAVGHRVQH
HHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHH
IVDMAERVSPHQLFHGGMRRFVSQQHHELLALQGGEDGLDPIGAFGVIIPGVMLQTDGVR
HHHHHHHCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHCCEEEECCCCC
EQQRCHSGLDVPRLYKFSVFSGKGGAISIPDFCMGRRRMSAKKRVDQLLVERGLVESRSK
HHHHHHCCCCCCCEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQALVMAGLVYSGDRRVDKPGTAMAEDCALELKGQDHPWVSRGGLKLAKALETFGLDPRD
HHHHHHHHHHCCCCCCCCCCCCCHHHHCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
KVAIDVGASTGGFTDVLLAHGAARVYAVDVGHGQLAWKLRSDSRVVVLERTNARHLTAEQ
CEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCHHH
IPEPVDMVVCDASFIGLETVLPAALSLARPGAWVAALIKPQFEVGKGRVGKGGVVREPEL
CCCCHHEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHCCCCCCCCCCCCCCCHH
HAEVCERIHAWLAGLPGWRVEGITESPILGPEGNKEFLIVGRYEGAPCAPASS
HHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
GGGIEHARLVPQDVLGAVAVVHVDVDHRHPLEAMGVAGVQRGDGRVAEEAEPHGVVALG
CCCCCHHHCCCHHHHCEEEEEEEECCCCCCHHHHCCCCEECCCCCCCCCCCCCCEEEEH
MVARRTHGAKGVAHLALGHGVHRRDAGPGGPQRRLARIARQDGVGIQVVVPVAVGHRVQH
HHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHH
IVDMAERVSPHQLFHGGMRRFVSQQHHELLALQGGEDGLDPIGAFGVIIPGVMLQTDGVR
HHHHHHHCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHCCEEEECCCCC
EQQRCHSGLDVPRLYKFSVFSGKGGAISIPDFCMGRRRMSAKKRVDQLLVERGLVESRSK
HHHHHHCCCCCCCEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQALVMAGLVYSGDRRVDKPGTAMAEDCALELKGQDHPWVSRGGLKLAKALETFGLDPRD
HHHHHHHHHHCCCCCCCCCCCCCHHHHCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
KVAIDVGASTGGFTDVLLAHGAARVYAVDVGHGQLAWKLRSDSRVVVLERTNARHLTAEQ
CEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCHHH
IPEPVDMVVCDASFIGLETVLPAALSLARPGAWVAALIKPQFEVGKGRVGKGGVVREPEL
CCCCHHEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHCCCCCCCCCCCCCCCHH
HAEVCERIHAWLAGLPGWRVEGITESPILGPEGNKEFLIVGRYEGAPCAPASS
HHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]