| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is ycdJ [C]
Identifier: 83311800
GI number: 83311800
Start: 2893594
End: 2894289
Strand: Reverse
Name: ycdJ [C]
Synonym: amb2701
Alternate gene names: 83311800
Gene position: 2894289-2893594 (Counterclockwise)
Preceding gene: 83311801
Following gene: 83311798
Centisome position: 58.27
GC content: 71.55
Gene sequence:
>696_bases ATGAGCCGCGGCCTCGTCCTGCTGCCCGGCCTGCTCAACGACCACCGCCTGTGGTTGCGGCAGGCCGCCGCCCTGGGGGG AGAGGTCGAGGTGTTGGTCGCCGACCTGACCTTGGACGAGTCCCTGGGCGCCATGGCCGAGCGGGTGCTGGGCGCCGCGC CCGAGCGTTTCGCCCTGGCCGGATTGTCCATGGGTGGCTATGTGGCCCTGGAGATCATGCGCCGGGCGCCGGGACGGGTG GAGCGGCTTGCCCTGCTCGACACCACCGCGCGGCCGGACCTGCCGGAACAGACCCAGCGGCGCCGGGATGCGGTCGAACT GGCCCGTTCGGGCGGTTTTGACAAGATCATGCCGACCATGCTGCCGCTGTTGCTGCACCCCGATCATTTGGCGGACGCGG CCATCACTGCCCTGGCCAAGGACATGGCGCGGGCGGTGGGGGCGCAGGCCTTCGCCCGCCAGCAGGCCGCCATCATGGCG CGGCCGGATTCCCGGGATTCGCTGGCGGCGATCGCTTGTCCGACCCTGGTACTGTGCGGCGCCGAGGACACCCTGACGCC GCCGGATCGTCACGACGAGATGGCGGCCCTGATCAAGGGGGCGCGGCGGGCGACCATTGCCCATTGCGGCCATCTGTCGC CCCTGGAGCAACCCGACGCGGTCAGCGCCGAGCTGCGGGCCTGGCTGTCAGTGTAG
Upstream 100 bases:
>100_bases TTGCCATGAATATGGATGCCTTCCTCGACAACGTGATGGTTTACGGCTTCTGGATCGGCCTGGGCTTCGGCGTGTCCTGG CTGATCCGCAAGTTCGCCGG
Downstream 100 bases:
>100_bases GCTGACCGTTCCCGGGCAATTGTCGCTTTCGACCTCCTTGGCGGGGCAGGGCATGGGCGAGAGTGTCTTGTCCAGGCAGA TACGGACCTCGGTCAGCTTG
Product: hydrolase or acyltransferase
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold; Hydrolase; Alpha/Beta Hydrolase; Hydrolase Alpha/Beta Fold Family; 3-Oxoadipate Enol-Lactonase; 3-Oxoadipate Enol-Lactone Hydrolase; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase Protein; Alpha/Beta Hydrolase Family Protein; Hydrolase Or Acyltransferase; Alpha/Beta Family Hydrolase; Hydrolase Alpha/Beta Hydrolase Fold Family Protein; Lipolytic; Beta-Ketoadipate Enol-Lactone Hydrolase; Alpha/Beta Hydrolase Fold-Domain Containing Protein; Alpha/Beta Fold Family Hydrolase/Acetyltransferase; Hydrolase Or Acyltransferase Of Alpha/Beta Superfamily; Chloride Peroxidase; Hydrolase Alpha; Alpha/Beta Hydrolase Superfamily Protein; 3-Oxoadipate Enol-Lactone Hydrolase Family Protein; Alpha/Beta Hydrolase Fold Domain-Containing Protein; Alpha/Beta Hydrolase Fold-Containing Protein; Alpha/Beta Superfamily Hydrolase/Acyltransferase
Number of amino acids: Translated: 231; Mature: 230
Protein sequence:
>231_residues MSRGLVLLPGLLNDHRLWLRQAAALGGEVEVLVADLTLDESLGAMAERVLGAAPERFALAGLSMGGYVALEIMRRAPGRV ERLALLDTTARPDLPEQTQRRRDAVELARSGGFDKIMPTMLPLLLHPDHLADAAITALAKDMARAVGAQAFARQQAAIMA RPDSRDSLAAIACPTLVLCGAEDTLTPPDRHDEMAALIKGARRATIAHCGHLSPLEQPDAVSAELRAWLSV
Sequences:
>Translated_231_residues MSRGLVLLPGLLNDHRLWLRQAAALGGEVEVLVADLTLDESLGAMAERVLGAAPERFALAGLSMGGYVALEIMRRAPGRV ERLALLDTTARPDLPEQTQRRRDAVELARSGGFDKIMPTMLPLLLHPDHLADAAITALAKDMARAVGAQAFARQQAAIMA RPDSRDSLAAIACPTLVLCGAEDTLTPPDRHDEMAALIKGARRATIAHCGHLSPLEQPDAVSAELRAWLSV >Mature_230_residues SRGLVLLPGLLNDHRLWLRQAAALGGEVEVLVADLTLDESLGAMAERVLGAAPERFALAGLSMGGYVALEIMRRAPGRVE RLALLDTTARPDLPEQTQRRRDAVELARSGGFDKIMPTMLPLLLHPDHLADAAITALAKDMARAVGAQAFARQQAAIMAR PDSRDSLAAIACPTLVLCGAEDTLTPPDRHDEMAALIKGARRATIAHCGHLSPLEQPDAVSAELRAWLSV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24697; Mature: 24566
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRGLVLLPGLLNDHRLWLRQAAALGGEVEVLVADLTLDESLGAMAERVLGAAPERFALA CCCCCEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHH GLSMGGYVALEIMRRAPGRVERLALLDTTARPDLPEQTQRRRDAVELARSGGFDKIMPTM CCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH LPLLLHPDHLADAAITALAKDMARAVGAQAFARQQAAIMARPDSRDSLAAIACPTLVLCG HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHEEEC AEDTLTPPDRHDEMAALIKGARRATIAHCGHLSPLEQPDAVSAELRAWLSV CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure SRGLVLLPGLLNDHRLWLRQAAALGGEVEVLVADLTLDESLGAMAERVLGAAPERFALA CCCCEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHH GLSMGGYVALEIMRRAPGRVERLALLDTTARPDLPEQTQRRRDAVELARSGGFDKIMPTM CCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH LPLLLHPDHLADAAITALAKDMARAVGAQAFARQQAAIMARPDSRDSLAAIACPTLVLCG HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHEEEC AEDTLTPPDRHDEMAALIKGARRATIAHCGHLSPLEQPDAVSAELRAWLSV CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA