| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is cph1 [H]
Identifier: 83311743
GI number: 83311743
Start: 2832035
End: 2834626
Strand: Reverse
Name: cph1 [H]
Synonym: amb2644
Alternate gene names: 83311743
Gene position: 2834626-2832035 (Counterclockwise)
Preceding gene: 83311744
Following gene: 83311742
Centisome position: 57.07
GC content: 64.24
Gene sequence:
>2592_bases GTGGATTTCAGGTCTCTGCGTATCAGAATTCTCTCTCTTTTCCTTCTGTCCTTCCTGGGGGCGGGCGCCGTGGTGGCTTT GGCGCTTGCCGGATCGCTGCAACGGGACGTTGAAACTCTGCTGGCCCGGCAGCAGGTGACCTTCGTCAGCGGATTGGCCG AGGAACTGGATCAGAAGATCAAGCTGCAGATCGAGGCCATGGAGCGGGTGGCGCCGCTGGTGCTCCGCGTCGATCGCGGC GACGGCGGTGCGCTCAAGGCTTTCATCGAGGACCGGACCGGCATCAAGGGATTTTTCGCCGGCGGCTTGCTGGTTCTCGG CGCGGATGGCCGGGTTCTGGCCGAAACGCCCAACCTGGGCCGGCTCGGCAAAGGCATGGCGGACGAGATCGGGGTCGGTT CGGTTCTGGCCTCCGGTCGCTCGCTGGTCAGCGAGCCCTATTTCGATCATGCGCTCAACCAGCCGGCGGTCGCCATGGCG GTGCCCATCCGCCGGGGCGAGGCCGTGGTCGGAGCGTTGGTGGGGATCGCCACCCTGACCCAAAGCAATCTTCTCGGCCG GCTGGTCGAGCAGAAGGTCGGTGAAAGCGGCGGCCTGTACATGGTGTCGCCGAAATCCGGCCTGATCGTCGTTTCCACCA ATAAGGAACGCATATTCACCCCCGTCCCTCGCCGTGGGCAGAACCATATGCTTGACCGTTACATGGACGGTTTCGAGGGC TCGGGGGTGACCGTCAGCTCGGCCGGGCTGGAGGAACTGACGTCGGCCCGGCGTATCGCTTCCACCGGCTGGGTGCTGGT GGCGCGGCTGCCCACCGCCGAGGCCTTCGAGCCGGTGGCCGATATCAAGACCCGCCTGTTCGCCGCCCTGGCCGGACTGG GGCTGACTTCCCTGGGGCTGCTGTGGCTGGTGCTTCGCTCGGCGCTGTCGCCGCTGCACCGGGCCACCGGGCGAATTCAG GCCATGGTCGACGGCAATGCCCCGTTCGAGGCGGTGGAGATTTCGCGCGGCGACGAGGTCGGGCGGATGATCGGCGCCTT CAATGCCCTGCAGGCCAAGGTTGCCGCCGCCGACGTGGCGCTGCGGGAGCGCGAGGGGCTCTATCATGCGCTGTTCCGCG GCTGCAAGGCGGTGGAACTGCTGATCGATCCCGCCGAGGACGGCCGCATCATCGACGCCAATCGCGCCGCCGAGGCTTAT TACGGTTGGTCCCATGACCAACTCCTGTCCATGCGGATTTCCGAGATCAATATCCTGGACAGGGCCGCCATCATCGCCGA AATGCACAAGGCCGAGCTTGAAGAGCGGGATCATTTCGATTTCCGCCACCGCCTGGCGTCCGGGGAAGTCCGCGACGTGG AGGTATGGTCGGGGCCGGTCCAGGTCACCGGCCGGCAATTGCTCTATTCCATCGTTCACGATGTGACCGCCAGACGCGCC GCGGAGCGTGAGGTCCGCTCGCTCCTGGCCTTCCGGCGAGCGGTTCTGGACGGTGCGGGGTCCTCCATCGTCGCTACCGC AGTCGACGGCACCATTCTGCTGTTCAATCCGACTGCCGAACGCTGGCTTGGCTACGGCGCGGAAGAGGTGGTCGGACGGA TGACCCCGGCGGCTTTCCATGATTCCGAAGAAGTTAGCCAGCGTGTAGCCCGTCTGAGCCAGGAACTGGGCCGAGAAGTC GAGCCCGGATTCGAGTGCTTCATCGCCAAGGTTCTGGACAGCGGCAAGCCCGACAGCGGTGAGTGGACCTATGTGCGCAA GGATGGCAGTCGGTTCCGCGTTCTGTTGACCGTTACCGCGCTCTATGACGAAGAGGGCGTGCTTTCGGGCTTTCTAGGTG TTGCCCAGGATATTAGTGCTCGCCTTTCGATAGAAAAAGAGCTGAAGCGTTCCAATGCCGAGCTGGAAAATTTCGCCTAT GTCGCGTCCCACGACCTTCGTCAGCCGCTGCGTATGATCAGTTCCTACATCGCCCTGCTGCAGCGGCGTTTGGGCGACGC TCTCGATCAGGACTGCCAGGACTTCATCGGCTTTGCCGTGGGCGGTGCCCAGCGCATGGATCACATGATCACGGATCTGC TGCAATACTCCCGTCTCGGGCGGAGCGGCACTCCGCCGGCGGCCGTGAATCTGGCTGAGGTGGTCAAGCTGGCCCAGGCC AATCTTGGCGCGCTGATCGAGGAAACCGGCGCGGCCGTTACCGTGGCCGAGGGATTGCCCACGGTGCGGGGCAATGAGGT GGAACTGGAACGGCTGTTCCAGAACCTGATCTCCAACGCGGTGAAGTTTCAGGCCCAAGGCCGGCTTCCGCTCGTGGAGA TTACGTGGAGAGCCACGGCGGATGAATGGATCATCTCGGTCCGGGACAACGGTATCGGCATCGACGAGGCCGGGCGGCAG AAGCTGTTTCAGATCTTCCAGCGGCTGGTGAGACTGGATCAGTACCCGGGAAGCGGTATCGGGCTGGCATCCTGCCGCAA GATTGCCGAGCACCACGGCGGCCGTATCTGGGTGGAATCCCAGCCGGGCGAGGGGTCGACGTTCCAGGTTGCACTGCCCG TGTCGGGACCGGACGAGTCGCACGCCGGATAA
Upstream 100 bases:
>100_bases AGTTGGAAAGCTGAAAAGGACGGGACTGGCCAGCAACAGGACTTGAGAGTGATTACCATTTCCCCTTACCCTGTTCGATG AACCAGGGGAGAGAGAAGAC
Downstream 100 bases:
>100_bases CGCGCTTGGGCGCCCAGGTGGCGCGTAGGTGCAATAATTCGTCTTCAAGGCATGGTTGCAATCCGTATGCACCCAGGCTA GGGTGAGGGATCGAACGTCG
Product: Signal transduction histidine kinase
Products: NA
Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]
Number of amino acids: Translated: 863; Mature: 863
Protein sequence:
>863_residues MDFRSLRIRILSLFLLSFLGAGAVVALALAGSLQRDVETLLARQQVTFVSGLAEELDQKIKLQIEAMERVAPLVLRVDRG DGGALKAFIEDRTGIKGFFAGGLLVLGADGRVLAETPNLGRLGKGMADEIGVGSVLASGRSLVSEPYFDHALNQPAVAMA VPIRRGEAVVGALVGIATLTQSNLLGRLVEQKVGESGGLYMVSPKSGLIVVSTNKERIFTPVPRRGQNHMLDRYMDGFEG SGVTVSSAGLEELTSARRIASTGWVLVARLPTAEAFEPVADIKTRLFAALAGLGLTSLGLLWLVLRSALSPLHRATGRIQ AMVDGNAPFEAVEISRGDEVGRMIGAFNALQAKVAAADVALREREGLYHALFRGCKAVELLIDPAEDGRIIDANRAAEAY YGWSHDQLLSMRISEINILDRAAIIAEMHKAELEERDHFDFRHRLASGEVRDVEVWSGPVQVTGRQLLYSIVHDVTARRA AEREVRSLLAFRRAVLDGAGSSIVATAVDGTILLFNPTAERWLGYGAEEVVGRMTPAAFHDSEEVSQRVARLSQELGREV EPGFECFIAKVLDSGKPDSGEWTYVRKDGSRFRVLLTVTALYDEEGVLSGFLGVAQDISARLSIEKELKRSNAELENFAY VASHDLRQPLRMISSYIALLQRRLGDALDQDCQDFIGFAVGGAQRMDHMITDLLQYSRLGRSGTPPAAVNLAEVVKLAQA NLGALIEETGAAVTVAEGLPTVRGNEVELERLFQNLISNAVKFQAQGRLPLVEITWRATADEWIISVRDNGIGIDEAGRQ KLFQIFQRLVRLDQYPGSGIGLASCRKIAEHHGGRIWVESQPGEGSTFQVALPVSGPDESHAG
Sequences:
>Translated_863_residues MDFRSLRIRILSLFLLSFLGAGAVVALALAGSLQRDVETLLARQQVTFVSGLAEELDQKIKLQIEAMERVAPLVLRVDRG DGGALKAFIEDRTGIKGFFAGGLLVLGADGRVLAETPNLGRLGKGMADEIGVGSVLASGRSLVSEPYFDHALNQPAVAMA VPIRRGEAVVGALVGIATLTQSNLLGRLVEQKVGESGGLYMVSPKSGLIVVSTNKERIFTPVPRRGQNHMLDRYMDGFEG SGVTVSSAGLEELTSARRIASTGWVLVARLPTAEAFEPVADIKTRLFAALAGLGLTSLGLLWLVLRSALSPLHRATGRIQ AMVDGNAPFEAVEISRGDEVGRMIGAFNALQAKVAAADVALREREGLYHALFRGCKAVELLIDPAEDGRIIDANRAAEAY YGWSHDQLLSMRISEINILDRAAIIAEMHKAELEERDHFDFRHRLASGEVRDVEVWSGPVQVTGRQLLYSIVHDVTARRA AEREVRSLLAFRRAVLDGAGSSIVATAVDGTILLFNPTAERWLGYGAEEVVGRMTPAAFHDSEEVSQRVARLSQELGREV EPGFECFIAKVLDSGKPDSGEWTYVRKDGSRFRVLLTVTALYDEEGVLSGFLGVAQDISARLSIEKELKRSNAELENFAY VASHDLRQPLRMISSYIALLQRRLGDALDQDCQDFIGFAVGGAQRMDHMITDLLQYSRLGRSGTPPAAVNLAEVVKLAQA NLGALIEETGAAVTVAEGLPTVRGNEVELERLFQNLISNAVKFQAQGRLPLVEITWRATADEWIISVRDNGIGIDEAGRQ KLFQIFQRLVRLDQYPGSGIGLASCRKIAEHHGGRIWVESQPGEGSTFQVALPVSGPDESHAG >Mature_863_residues MDFRSLRIRILSLFLLSFLGAGAVVALALAGSLQRDVETLLARQQVTFVSGLAEELDQKIKLQIEAMERVAPLVLRVDRG DGGALKAFIEDRTGIKGFFAGGLLVLGADGRVLAETPNLGRLGKGMADEIGVGSVLASGRSLVSEPYFDHALNQPAVAMA VPIRRGEAVVGALVGIATLTQSNLLGRLVEQKVGESGGLYMVSPKSGLIVVSTNKERIFTPVPRRGQNHMLDRYMDGFEG SGVTVSSAGLEELTSARRIASTGWVLVARLPTAEAFEPVADIKTRLFAALAGLGLTSLGLLWLVLRSALSPLHRATGRIQ AMVDGNAPFEAVEISRGDEVGRMIGAFNALQAKVAAADVALREREGLYHALFRGCKAVELLIDPAEDGRIIDANRAAEAY YGWSHDQLLSMRISEINILDRAAIIAEMHKAELEERDHFDFRHRLASGEVRDVEVWSGPVQVTGRQLLYSIVHDVTARRA AEREVRSLLAFRRAVLDGAGSSIVATAVDGTILLFNPTAERWLGYGAEEVVGRMTPAAFHDSEEVSQRVARLSQELGREV EPGFECFIAKVLDSGKPDSGEWTYVRKDGSRFRVLLTVTALYDEEGVLSGFLGVAQDISARLSIEKELKRSNAELENFAY VASHDLRQPLRMISSYIALLQRRLGDALDQDCQDFIGFAVGGAQRMDHMITDLLQYSRLGRSGTPPAAVNLAEVVKLAQA NLGALIEETGAAVTVAEGLPTVRGNEVELERLFQNLISNAVKFQAQGRLPLVEITWRATADEWIISVRDNGIGIDEAGRQ KLFQIFQRLVRLDQYPGSGIGLASCRKIAEHHGGRIWVESQPGEGSTFQVALPVSGPDESHAG
Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift
COG id: COG4251
COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=395, Percent_Identity=25.5696202531646, Blast_Score=111, Evalue=2e-25, Organism=Escherichia coli, GI87081881, Length=126, Percent_Identity=36.5079365079365, Blast_Score=94, Evalue=4e-20, Organism=Escherichia coli, GI145693157, Length=264, Percent_Identity=28.4090909090909, Blast_Score=89, Evalue=8e-19, Organism=Escherichia coli, GI1788713, Length=410, Percent_Identity=21.4634146341463, Blast_Score=86, Evalue=1e-17, Organism=Escherichia coli, GI48994928, Length=278, Percent_Identity=28.4172661870504, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1789149, Length=226, Percent_Identity=30.0884955752212, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI1786600, Length=248, Percent_Identity=25.8064516129032, Blast_Score=70, Evalue=5e-13, Organism=Escherichia coli, GI1790346, Length=222, Percent_Identity=28.3783783783784, Blast_Score=70, Evalue=8e-13, Organism=Escherichia coli, GI87081816, Length=125, Percent_Identity=32.8, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1786912, Length=271, Percent_Identity=28.0442804428044, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1790436, Length=251, Percent_Identity=26.2948207171315, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR000014 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 93575; Mature: 93575
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: PS50885 HAMP ; PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFRSLRIRILSLFLLSFLGAGAVVALALAGSLQRDVETLLARQQVTFVSGLAEELDQKI CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLQIEAMERVAPLVLRVDRGDGGALKAFIEDRTGIKGFFAGGLLVLGADGRVLAETPNLG HHHHHHHHHHCEEEEEEECCCCCEEHHHHHCCCCCCCEECCCEEEECCCCEEEECCCCCC RLGKGMADEIGVGSVLASGRSLVSEPYFDHALNQPAVAMAVPIRRGEAVVGALVGIATLT CCCCCCHHHCCHHHHHHCCHHHHCCCCHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH QSNLLGRLVEQKVGESGGLYMVSPKSGLIVVSTNKERIFTPVPRRGQNHMLDRYMDGFEG HHHHHHHHHHHHCCCCCCEEEECCCCCEEEEECCCCEEECCCCCCCCHHHHHHHHCCCCC SGVTVSSAGLEELTSARRIASTGWVLVARLPTAEAFEPVADIKTRLFAALAGLGLTSLGL CCEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH LWLVLRSALSPLHRATGRIQAMVDGNAPFEAVEISRGDEVGRMIGAFNALQAKVAAADVA HHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH LREREGLYHALFRGCKAVELLIDPAEDGRIIDANRAAEAYYGWSHDQLLSMRISEINILD HHHHCCHHHHHHCCCCEEEEEECCCCCCEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHH RAAIIAEMHKAELEERDHFDFRHRLASGEVRDVEVWSGPVQVTGRQLLYSIVHDVTARRA HHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH AEREVRSLLAFRRAVLDGAGSSIVATAVDGTILLFNPTAERWLGYGAEEVVGRMTPAAFH HHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCHHHHHCCCHHHHHHHCCCHHCC DSEEVSQRVARLSQELGREVEPGFECFIAKVLDSGKPDSGEWTYVRKDGSRFRVLLTVTA CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEEEE LYDEEGVLSGFLGVAQDISARLSIEKELKRSNAELENFAYVASHDLRQPLRMISSYIALL HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QRRLGDALDQDCQDFIGFAVGGAQRMDHMITDLLQYSRLGRSGTPPAAVNLAEVVKLAQA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH NLGALIEETGAAVTVAEGLPTVRGNEVELERLFQNLISNAVKFQAQGRLPLVEITWRATA HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHEEHCCCCCCEEEEEEECCC DEWIISVRDNGIGIDEAGRQKLFQIFQRLVRLDQYPGSGIGLASCRKIAEHHGGRIWVES CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEC QPGEGSTFQVALPVSGPDESHAG CCCCCCEEEEEEECCCCCCCCCC >Mature Secondary Structure MDFRSLRIRILSLFLLSFLGAGAVVALALAGSLQRDVETLLARQQVTFVSGLAEELDQKI CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLQIEAMERVAPLVLRVDRGDGGALKAFIEDRTGIKGFFAGGLLVLGADGRVLAETPNLG HHHHHHHHHHCEEEEEEECCCCCEEHHHHHCCCCCCCEECCCEEEECCCCEEEECCCCCC RLGKGMADEIGVGSVLASGRSLVSEPYFDHALNQPAVAMAVPIRRGEAVVGALVGIATLT CCCCCCHHHCCHHHHHHCCHHHHCCCCHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH QSNLLGRLVEQKVGESGGLYMVSPKSGLIVVSTNKERIFTPVPRRGQNHMLDRYMDGFEG HHHHHHHHHHHHCCCCCCEEEECCCCCEEEEECCCCEEECCCCCCCCHHHHHHHHCCCCC SGVTVSSAGLEELTSARRIASTGWVLVARLPTAEAFEPVADIKTRLFAALAGLGLTSLGL CCEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH LWLVLRSALSPLHRATGRIQAMVDGNAPFEAVEISRGDEVGRMIGAFNALQAKVAAADVA HHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH LREREGLYHALFRGCKAVELLIDPAEDGRIIDANRAAEAYYGWSHDQLLSMRISEINILD HHHHCCHHHHHHCCCCEEEEEECCCCCCEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHH RAAIIAEMHKAELEERDHFDFRHRLASGEVRDVEVWSGPVQVTGRQLLYSIVHDVTARRA HHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH AEREVRSLLAFRRAVLDGAGSSIVATAVDGTILLFNPTAERWLGYGAEEVVGRMTPAAFH HHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCHHHHHCCCHHHHHHHCCCHHCC DSEEVSQRVARLSQELGREVEPGFECFIAKVLDSGKPDSGEWTYVRKDGSRFRVLLTVTA CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEEEE LYDEEGVLSGFLGVAQDISARLSIEKELKRSNAELENFAYVASHDLRQPLRMISSYIALL HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QRRLGDALDQDCQDFIGFAVGGAQRMDHMITDLLQYSRLGRSGTPPAAVNLAEVVKLAQA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH NLGALIEETGAAVTVAEGLPTVRGNEVELERLFQNLISNAVKFQAQGRLPLVEITWRATA HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHEEHCCCCCCEEEEEEECCC DEWIISVRDNGIGIDEAGRQKLFQIFQRLVRLDQYPGSGIGLASCRKIAEHHGGRIWVES CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEC QPGEGSTFQVALPVSGPDESHAG CCCCCCEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]