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The map label for this gene is nlpD [H]

Identifier: 83311617

GI number: 83311617

Start: 2700365

End: 2701456

Strand: Reverse

Name: nlpD [H]

Synonym: amb2518

Alternate gene names: 83311617

Gene position: 2701456-2700365 (Counterclockwise)

Preceding gene: 83311618

Following gene: 83311616

Centisome position: 54.39

GC content: 68.32

Gene sequence:

>1092_bases
ATGATTGCCGCTGGCCGTCGCCGCGCTTATAGTACGGGCATGAGGCACGCGCCCCATCATCTGGTTATTCTCCTGATCCT
CGCCGCGGCGATCTCGGCGTGCACCCCCAGTTATGATTCCAAGGTGCCGGTCGGCCGCAGCGACGGCCCGCTGCAGGTGC
AGCGCCCGGCCACGGTCACCGTCTATGCCGGCGACACCGTCTATTCCATCGCCCGGCGCTATTCCCTGACCGTCCGCGAC
CTGATCGAGACCAACAATCTTCAGCCGCCCTACCAGTTGCAGCCGGGGACCGTGCTGCGCCTGCCCGGTGGCGGCTCGGA
TTACGTGGTGCAGCGCGGCGACACCCTGTCGGTGCTGGCGCGGCGCTTCAAGGTGGACTTCAACTCGCTGGCCGCCACCA
ACGGCAAGCGGGCGCCCTATGTGTTGCAGGTAGGCGAGCGGCTGACCATTCCGGGCCCCAAGGCCTCGGTGACCCAGACC
GCCGCGACACCAGCACCGGCAACGGGCGGCGGTTCCATGGTGGTGACCTCTCCCCACGCCTCGGGCGGGGCGGGGGGCGG
CAAGCCTGCGGCCAAGGCCGAGGTGCCGCCGGTCTATGCCCAGGCGCCCAGCCATCCGGCACCACCTCCGGCGGCGGTTC
CCGCCGTGCCTCCGGCCAGGGCGGGGTCCACCTTCCTGTGGCCGGTCAAGGGCGAGGTGGTGGCGGAGTTCGGACCGCTG
CCCGGCAAGGGGCAGCACAACGACGGCATCAATATCGTCGCCGCCAAAGGCACGCCGGTGCGCGCCGCCGAGAACGGCGT
GGTGGCCTATGTGGGCAACGAGTTGAAAGGCTTCGGCAATCTGCTGCTGATCAAGCATGCGGACAATTGGATGACCGCCT
ATGCCCATAACGACCAACTGATGGTCAAGCGCGGCGATCGGGTTCGCCGCGGCCAGACCATCGCCACGCTGGGCGCCAGC
GGATCGGTCACTTCGCCGCAGCTGCACTTCGAGATCCGCCGGGGAACCGAGGCCGTCAATCCCGTGGAATACCTGCAGGA
CAAGGTCGCGGACGACGGGGCTGTGCGCCAGCTGGCGGCGATTGCGTATTGA

Upstream 100 bases:

>100_bases
ACCAGGAACTGGTGCGGATCACCAAGACCGATCGCGGCATCGACATCCAGCCGTTTCTGCCGGTGCGTTTCGTGCCGCTG
GTGGAGGGGATACCGGAGGA

Downstream 100 bases:

>100_bases
CCCGGATCGCGGAAGAGCCCACCCTTAATTCCTAATATAGTGACCGTTCGGCATAGGGCGGCGCGAGGGATGGCTTCCAA
GGAGGGCCGCATGGCAAGTG

Product: membrane protein related to metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MIAAGRRRAYSTGMRHAPHHLVILLILAAAISACTPSYDSKVPVGRSDGPLQVQRPATVTVYAGDTVYSIARRYSLTVRD
LIETNNLQPPYQLQPGTVLRLPGGGSDYVVQRGDTLSVLARRFKVDFNSLAATNGKRAPYVLQVGERLTIPGPKASVTQT
AATPAPATGGGSMVVTSPHASGGAGGGKPAAKAEVPPVYAQAPSHPAPPPAAVPAVPPARAGSTFLWPVKGEVVAEFGPL
PGKGQHNDGINIVAAKGTPVRAAENGVVAYVGNELKGFGNLLLIKHADNWMTAYAHNDQLMVKRGDRVRRGQTIATLGAS
GSVTSPQLHFEIRRGTEAVNPVEYLQDKVADDGAVRQLAAIAY

Sequences:

>Translated_363_residues
MIAAGRRRAYSTGMRHAPHHLVILLILAAAISACTPSYDSKVPVGRSDGPLQVQRPATVTVYAGDTVYSIARRYSLTVRD
LIETNNLQPPYQLQPGTVLRLPGGGSDYVVQRGDTLSVLARRFKVDFNSLAATNGKRAPYVLQVGERLTIPGPKASVTQT
AATPAPATGGGSMVVTSPHASGGAGGGKPAAKAEVPPVYAQAPSHPAPPPAAVPAVPPARAGSTFLWPVKGEVVAEFGPL
PGKGQHNDGINIVAAKGTPVRAAENGVVAYVGNELKGFGNLLLIKHADNWMTAYAHNDQLMVKRGDRVRRGQTIATLGAS
GSVTSPQLHFEIRRGTEAVNPVEYLQDKVADDGAVRQLAAIAY
>Mature_363_residues
MIAAGRRRAYSTGMRHAPHHLVILLILAAAISACTPSYDSKVPVGRSDGPLQVQRPATVTVYAGDTVYSIARRYSLTVRD
LIETNNLQPPYQLQPGTVLRLPGGGSDYVVQRGDTLSVLARRFKVDFNSLAATNGKRAPYVLQVGERLTIPGPKASVTQT
AATPAPATGGGSMVVTSPHASGGAGGGKPAAKAEVPPVYAQAPSHPAPPPAAVPAVPPARAGSTFLWPVKGEVVAEFGPL
PGKGQHNDGINIVAAKGTPVRAAENGVVAYVGNELKGFGNLLLIKHADNWMTAYAHNDQLMVKRGDRVRRGQTIATLGAS
GSVTSPQLHFEIRRGTEAVNPVEYLQDKVADDGAVRQLAAIAY

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=241, Percent_Identity=35.6846473029046, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789099, Length=287, Percent_Identity=33.1010452961672, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI87082297, Length=124, Percent_Identity=37.0967741935484, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 38001; Mature: 38001

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAAGRRRAYSTGMRHAPHHLVILLILAAAISACTPSYDSKVPVGRSDGPLQVQRPATVT
CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEE
VYAGDTVYSIARRYSLTVRDLIETNNLQPPYQLQPGTVLRLPGGGSDYVVQRGDTLSVLA
EEECCHHHHHHHHHCCHHHHHHHHCCCCCCCEECCCCEEECCCCCCCEEEECCCHHHHHH
RRFKVDFNSLAATNGKRAPYVLQVGERLTIPGPKASVTQTAATPAPATGGGSMVVTSPHA
HHHHCCHHHHHCCCCCCCCEEEECCCEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCC
SGGAGGGKPAAKAEVPPVYAQAPSHPAPPPAAVPAVPPARAGSTFLWPVKGEVVAEFGPL
CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCC
PGKGQHNDGINIVAAKGTPVRAAENGVVAYVGNELKGFGNLLLIKHADNWMTAYAHNDQL
CCCCCCCCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCEEEEEECCCEEEEEEECCEE
MVKRGDRVRRGQTIATLGASGSVTSPQLHFEIRRGTEAVNPVEYLQDKVADDGAVRQLAA
EEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHH
IAY
HCC
>Mature Secondary Structure
MIAAGRRRAYSTGMRHAPHHLVILLILAAAISACTPSYDSKVPVGRSDGPLQVQRPATVT
CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEE
VYAGDTVYSIARRYSLTVRDLIETNNLQPPYQLQPGTVLRLPGGGSDYVVQRGDTLSVLA
EEECCHHHHHHHHHCCHHHHHHHHCCCCCCCEECCCCEEECCCCCCCEEEECCCHHHHHH
RRFKVDFNSLAATNGKRAPYVLQVGERLTIPGPKASVTQTAATPAPATGGGSMVVTSPHA
HHHHCCHHHHHCCCCCCCCEEEECCCEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCC
SGGAGGGKPAAKAEVPPVYAQAPSHPAPPPAAVPAVPPARAGSTFLWPVKGEVVAEFGPL
CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCC
PGKGQHNDGINIVAAKGTPVRAAENGVVAYVGNELKGFGNLLLIKHADNWMTAYAHNDQL
CCCCCCCCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCEEEEEECCCEEEEEEECCEE
MVKRGDRVRRGQTIATLGASGSVTSPQLHFEIRRGTEAVNPVEYLQDKVADDGAVRQLAA
EEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHH
IAY
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]