Click here to switch to the map view.

The map label for this gene is 83311607

Identifier: 83311607

GI number: 83311607

Start: 2689852

End: 2690589

Strand: Reverse

Name: 83311607

Synonym: amb2508

Alternate gene names: NA

Gene position: 2690589-2689852 (Counterclockwise)

Preceding gene: 83311611

Following gene: 83311600

Centisome position: 54.17

GC content: 67.21

Gene sequence:

>738_bases
ATGCTGCTCTACGCCTTCAACGTCGAGATCGCCAAGGTGCAGGAAAGCGTGCGCGAGCCCATGGCCGGGATGATCCGCCT
GCAATGGTGGCGCGATTCCCTGATCAGCGGGGCGGAAGGCGGGGCTTGCGACAACCATCCGGTGGCGCGGCCCCTGGGCG
AGCTGATTCGCGGGTGCGGCCTGCCTCTGGAGCCGTTCGACGACCTCATTTCGGCCCGTCAGGATGATCTCGAGGGCTTT
TCTCCCAAGGATCTGCCCGAGGCCGAGCGCTATGCCGAGCGCAGTTCCGCCGCCCTGACGGCCTTGGCCTTGGCGGTGCT
GGGGGCGGAAACCGAGGATTTCCGCCGGGCCGGCCGCCATATGGGGATCGCCTGGGGGCTGGTCGGCAATCTCCGCGCCC
TGGGGCATCACCTGTCAATGGGCAAGTTGACATTGCCGGAAGACGTGCTTCGCACCGCCGGCACCAGCGCTGGCGCCATC
AGGGAAGGGCGGGCGTCAACCGAATCGTTGACGGCCGCGGCCCAGGCCATGGGGCAATGTGCCCGTCACCACTTGGCCGA
AGCCCGCCGGGTCAGGCCGGGTCGCCATGGGCTGGCGGCGCTGCTTCCGGCCATCCTGGCCGACGGCTATCTGCAAGTGC
TTGAAAAAGCACGGTGGAATCCGTTCGATAGCCGGGTTTCCCGTCCCAATCCCCGGCCTGTTCGGCTGATTATCGCCCAG
GCGATGGGGCGGTTCTGA

Upstream 100 bases:

>100_bases
CATCCCCCCTCCTGTCCCACGCCGCCCGGCTGGTGTCCGAATTCGACCGCGATCGCTTCGTCACCGCCTGTTCGCGCCCC
CCGAGAGGCGCGAGGCGCTG

Downstream 100 bases:

>100_bases
GCAACATTGCCAAAGCGCAATGAAGACATTGCGGAAGTGCAATTTTAAAATTGCCTTAACGCAATGAAATCTGGAACCTG
CAAAGGTAAGGCAAATATAG

Product: phytoene/squalene synthetase

Products: diphosphate; prephytoene diphosphate

Alternate protein names: Phytoene Synthase; Phytoene Synthase Protein; Squalene; Squalene And Phytoene Synthases Superfamily; Phytoene/Squalene Synthetase; Phytoene Synthase Family Protein

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MLLYAFNVEIAKVQESVREPMAGMIRLQWWRDSLISGAEGGACDNHPVARPLGELIRGCGLPLEPFDDLISARQDDLEGF
SPKDLPEAERYAERSSAALTALALAVLGAETEDFRRAGRHMGIAWGLVGNLRALGHHLSMGKLTLPEDVLRTAGTSAGAI
REGRASTESLTAAAQAMGQCARHHLAEARRVRPGRHGLAALLPAILADGYLQVLEKARWNPFDSRVSRPNPRPVRLIIAQ
AMGRF

Sequences:

>Translated_245_residues
MLLYAFNVEIAKVQESVREPMAGMIRLQWWRDSLISGAEGGACDNHPVARPLGELIRGCGLPLEPFDDLISARQDDLEGF
SPKDLPEAERYAERSSAALTALALAVLGAETEDFRRAGRHMGIAWGLVGNLRALGHHLSMGKLTLPEDVLRTAGTSAGAI
REGRASTESLTAAAQAMGQCARHHLAEARRVRPGRHGLAALLPAILADGYLQVLEKARWNPFDSRVSRPNPRPVRLIIAQ
AMGRF
>Mature_245_residues
MLLYAFNVEIAKVQESVREPMAGMIRLQWWRDSLISGAEGGACDNHPVARPLGELIRGCGLPLEPFDDLISARQDDLEGF
SPKDLPEAERYAERSSAALTALALAVLGAETEDFRRAGRHMGIAWGLVGNLRALGHHLSMGKLTLPEDVLRTAGTSAGAI
REGRASTESLTAAAQAMGQCARHHLAEARRVRPGRHGLAALLPAILADGYLQVLEKARWNPFDSRVSRPNPRPVRLIIAQ
AMGRF

Specific function: Unknown

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI124517691, Length=234, Percent_Identity=27.7777777777778, Blast_Score=93, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.5.1.32

Molecular weight: Translated: 26626; Mature: 26626

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLYAFNVEIAKVQESVREPMAGMIRLQWWRDSLISGAEGGACDNHPVARPLGELIRGCG
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
LPLEPFDDLISARQDDLEGFSPKDLPEAERYAERSSAALTALALAVLGAETEDFRRAGRH
CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
MGIAWGLVGNLRALGHHLSMGKLTLPEDVLRTAGTSAGAIREGRASTESLTAAAQAMGQC
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHH
ARHHLAEARRVRPGRHGLAALLPAILADGYLQVLEKARWNPFDSRVSRPNPRPVRLIIAQ
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHH
AMGRF
HHCCC
>Mature Secondary Structure
MLLYAFNVEIAKVQESVREPMAGMIRLQWWRDSLISGAEGGACDNHPVARPLGELIRGCG
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
LPLEPFDDLISARQDDLEGFSPKDLPEAERYAERSSAALTALALAVLGAETEDFRRAGRH
CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
MGIAWGLVGNLRALGHHLSMGKLTLPEDVLRTAGTSAGAIREGRASTESLTAAAQAMGQC
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHH
ARHHLAEARRVRPGRHGLAALLPAILADGYLQVLEKARWNPFDSRVSRPNPRPVRLIIAQ
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHH
AMGRF
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: geranylgeranyl diphosphate

Specific reaction: 2 geranylgeranyl diphosphate = diphosphate + prephytoene diphosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA