BacMap

Definition	Magnetospirillum magneticum AMB-1 chromosome, complete genome.
Accession	NC_007626
Length	4,967,148

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The map label for this gene is ydfG [H]

Identifier: 83311489

GI number: 83311489

Start: 2595950

End: 2596702

Strand: Reverse

Name: ydfG [H]

Synonym: amb2390

Alternate gene names: 83311489

Gene position: 2596702-2595950 (Counterclockwise)

Preceding gene: 83311490

Following gene: 83311484

Centisome position: 52.28

GC content: 65.87

Gene sequence:

>753_bases
ATGTGGAAGAACCGCACCGTGCTGGTCACCGGCGCCACCGCCGGTTTCGGCGCCGCCACCGCCCGACGCTTTGCCGCCGC
CGGTGCCAATATGGTGATCTGCGGCCGCCGCACCGAGCGCCTGGAGGCTCTCAAGGCCGAACTGGGGGGCGTTCCCTGCC
ACGCCGCGACCTTGGATGTTCGCGATGGCGCCGCCGTGGCGGCCTTTGCCGCCGCCCTGCCCTGGCCGGTGGACGTCCTG
GTCAACAATGCCGGCCTGGCCTTGGGGCTGGAACCGGCCCAGGCCGCTGACCTGAACGACTGGGAAACCATGATCGACAC
CAATATCAAGGGCCTGATGTACATGACCCGCGCCATCCTGCCCGGTATGGTGGAGCGCAACCGGGGTCATGTGGTCAATA
TCAGCTCGGTCGCCGGGACCTATCCCTATCCCGGCGGCAACATGTATGGCGCCACCAAGGCCGCCGTCACCCAGTTCTCG
CTGAATCTCATCGCCGATCTGGTCAAGACCAAGGTGCGGGTGACCAATATCGAGCCCGGCATGTGCGGCGGCAGCGAGTT
CTCCCAGGTGCGGTTCCATGGCGACGCCGAAAAAGCCGCCAAGGTCTATGAAGGCACCGAGCCCCTGACCGCCGAAGACA
TCGCCGAGGCGGTGTTCTGGTCGGCCTCCCTGCCCGCCCACGTCAACATCAACCGCATCGAGATGATGCCGGTTTGTCAG
GCTTCGGCGGCCTTCGCGGTTCACCGCTCTTAA

Upstream 100 bases:

>100_bases
AAGATCGAGAACGCCCTGTCCGCCATGCCTGAATTGGTGATGATCCGTGATGTGGATCCCGAGCGTCCCCTAGCCCCCCG
TGCCTCGGAGCTTAAATAGC

Downstream 100 bases:

>100_bases
TCAGGCTCCACCCGGGGGGCTTTTGCCCCCGGTCCCCCGATCGGGAAGCACAGCTTCCCGAACCCTTCGGTGCCGCGAAG
CGAAGAAATCCTACTTCCGC

Product: short-chain alcohol dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MWKNRTVLVTGATAGFGAATARRFAAAGANMVICGRRTERLEALKAELGGVPCHAATLDVRDGAAVAAFAAALPWPVDVL
VNNAGLALGLEPAQAADLNDWETMIDTNIKGLMYMTRAILPGMVERNRGHVVNISSVAGTYPYPGGNMYGATKAAVTQFS
LNLIADLVKTKVRVTNIEPGMCGGSEFSQVRFHGDAEKAAKVYEGTEPLTAEDIAEAVFWSASLPAHVNINRIEMMPVCQ
ASAAFAVHRS

Sequences:

>Translated_250_residues
MWKNRTVLVTGATAGFGAATARRFAAAGANMVICGRRTERLEALKAELGGVPCHAATLDVRDGAAVAAFAAALPWPVDVL
VNNAGLALGLEPAQAADLNDWETMIDTNIKGLMYMTRAILPGMVERNRGHVVNISSVAGTYPYPGGNMYGATKAAVTQFS
LNLIADLVKTKVRVTNIEPGMCGGSEFSQVRFHGDAEKAAKVYEGTEPLTAEDIAEAVFWSASLPAHVNINRIEMMPVCQ
ASAAFAVHRS
>Mature_250_residues
MWKNRTVLVTGATAGFGAATARRFAAAGANMVICGRRTERLEALKAELGGVPCHAATLDVRDGAAVAAFAAALPWPVDVL
VNNAGLALGLEPAQAADLNDWETMIDTNIKGLMYMTRAILPGMVERNRGHVVNISSVAGTYPYPGGNMYGATKAAVTQFS
LNLIADLVKTKVRVTNIEPGMCGGSEFSQVRFHGDAEKAAKVYEGTEPLTAEDIAEAVFWSASLPAHVNINRIEMMPVCQ
ASAAFAVHRS

Specific function: Catalyzes the NADP-dependent oxidation of L-allo- threonine and L-serine [H]

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=254, Percent_Identity=34.251968503937, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=37.17277486911, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI32483357, Length=208, Percent_Identity=31.25, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI7657478, Length=183, Percent_Identity=34.9726775956284, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI157739938, Length=187, Percent_Identity=31.5508021390374, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI150247226, Length=222, Percent_Identity=31.0810810810811, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI5031737, Length=199, Percent_Identity=30.6532663316583, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI7705855, Length=184, Percent_Identity=32.6086956521739, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI126723191, Length=178, Percent_Identity=30.8988764044944, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=29.8969072164948, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI4557649, Length=177, Percent_Identity=30.5084745762712, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI40548397, Length=218, Percent_Identity=30.2752293577982, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI214010158, Length=218, Percent_Identity=30.2752293577982, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI214010156, Length=218, Percent_Identity=30.2752293577982, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI22758144, Length=218, Percent_Identity=30.2752293577982, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI126723750, Length=215, Percent_Identity=29.7674418604651, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI7706318, Length=184, Percent_Identity=30.9782608695652, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI226371731, Length=189, Percent_Identity=30.6878306878307, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI22507405, Length=184, Percent_Identity=31.5217391304348, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI4758504, Length=195, Percent_Identity=30.2564102564103, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI210032110, Length=168, Percent_Identity=31.547619047619, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI19743808, Length=186, Percent_Identity=28.494623655914, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI223718074, Length=185, Percent_Identity=32.972972972973, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI7705925, Length=176, Percent_Identity=28.9772727272727, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI19923817, Length=216, Percent_Identity=24.537037037037, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI40807363, Length=162, Percent_Identity=32.0987654320988, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1787820, Length=247, Percent_Identity=62.3481781376518, Blast_Score=308, Evalue=2e-85,
Organism=Escherichia coli, GI87082100, Length=183, Percent_Identity=39.8907103825137, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=28.9256198347107, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790717, Length=181, Percent_Identity=28.1767955801105, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI87082160, Length=185, Percent_Identity=30.8108108108108, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=27.2, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786812, Length=245, Percent_Identity=26.9387755102041, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787526, Length=188, Percent_Identity=27.1276595744681, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=200, Percent_Identity=32.5, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17562904, Length=197, Percent_Identity=33.502538071066, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=193, Percent_Identity=30.0518134715026, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=191, Percent_Identity=31.413612565445, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17508895, Length=224, Percent_Identity=29.0178571428571, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI193203117, Length=185, Percent_Identity=34.0540540540541, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI193203115, Length=187, Percent_Identity=33.6898395721925, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=222, Percent_Identity=31.5315315315315, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71994600, Length=242, Percent_Identity=27.6859504132231, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=197, Percent_Identity=29.4416243654822, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=191, Percent_Identity=30.8900523560209, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=191, Percent_Identity=30.3664921465969, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=195, Percent_Identity=28.2051282051282, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=217, Percent_Identity=29.4930875576037, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=234, Percent_Identity=26.9230769230769, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=191, Percent_Identity=28.7958115183246, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=244, Percent_Identity=28.2786885245902, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=191, Percent_Identity=29.8429319371728, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=200, Percent_Identity=31.5, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=215, Percent_Identity=26.9767441860465, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=207, Percent_Identity=28.5024154589372, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=198, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=187, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=154, Percent_Identity=31.1688311688312, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=248, Percent_Identity=37.9032258064516, Blast_Score=166, Evalue=3e-42,
Organism=Saccharomyces cerevisiae, GI6322067, Length=177, Percent_Identity=29.3785310734463, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322227, Length=200, Percent_Identity=27, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=190, Percent_Identity=25.2631578947368, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI116007236, Length=253, Percent_Identity=34.3873517786561, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI23397609, Length=182, Percent_Identity=36.8131868131868, Blast_Score=117, Evalue=5e-27,
Organism=Drosophila melanogaster, GI21357041, Length=186, Percent_Identity=31.7204301075269, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI28571387, Length=257, Percent_Identity=31.9066147859922, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24643142, Length=182, Percent_Identity=34.6153846153846, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21358495, Length=225, Percent_Identity=30.6666666666667, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24648693, Length=251, Percent_Identity=32.2709163346614, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21355889, Length=251, Percent_Identity=32.2709163346614, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI116007238, Length=216, Percent_Identity=33.7962962962963, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI28571526, Length=237, Percent_Identity=30.8016877637131, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281364494, Length=253, Percent_Identity=30.4347826086957, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24641388, Length=253, Percent_Identity=32.0158102766798, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI116007234, Length=257, Percent_Identity=32.295719844358, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24644339, Length=237, Percent_Identity=30.8016877637131, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24663911, Length=260, Percent_Identity=31.1538461538462, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24641232, Length=261, Percent_Identity=29.5019157088123, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24640442, Length=193, Percent_Identity=30.5699481865285, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24648944, Length=246, Percent_Identity=30.8943089430894, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI161076933, Length=180, Percent_Identity=30.5555555555556, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24584748, Length=180, Percent_Identity=30.5555555555556, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI116007232, Length=194, Percent_Identity=35.0515463917526, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28574402, Length=184, Percent_Identity=30.9782608695652, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24584744, Length=184, Percent_Identity=30.9782608695652, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24584752, Length=182, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21355631, Length=170, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24581726, Length=196, Percent_Identity=30.1020408163265, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355319, Length=202, Percent_Identity=24.2574257425743, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17737361, Length=196, Percent_Identity=32.1428571428571, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45553409, Length=207, Percent_Identity=28.0193236714976, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24647948, Length=207, Percent_Identity=28.0193236714976, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24647946, Length=207, Percent_Identity=28.0193236714976, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26448; Mature: 26448

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKNRTVLVTGATAGFGAATARRFAAAGANMVICGRRTERLEALKAELGGVPCHAATLDV
CCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEC
RDGAAVAAFAAALPWPVDVLVNNAGLALGLEPAQAADLNDWETMIDTNIKGLMYMTRAIL
CCCCHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
PGMVERNRGHVVNISSVAGTYPYPGGNMYGATKAAVTQFSLNLIADLVKTKVRVTNIEPG
CHHHHCCCCCEEEEHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEECCCC
MCGGSEFSQVRFHGDAEKAAKVYEGTEPLTAEDIAEAVFWSASLPAHVNINRIEMMPVCQ
CCCCCCCCEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEECCCEEEECEECC
ASAAFAVHRS
CCCEEEEECC
>Mature Secondary Structure
MWKNRTVLVTGATAGFGAATARRFAAAGANMVICGRRTERLEALKAELGGVPCHAATLDV
CCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEC
RDGAAVAAFAAALPWPVDVLVNNAGLALGLEPAQAADLNDWETMIDTNIKGLMYMTRAIL
CCCCHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
PGMVERNRGHVVNISSVAGTYPYPGGNMYGATKAAVTQFSLNLIADLVKTKVRVTNIEPG
CHHHHCCCCCEEEEHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEECCCC
MCGGSEFSQVRFHGDAEKAAKVYEGTEPLTAEDIAEAVFWSASLPAHVNINRIEMMPVCQ
CCCCCCCCEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEECCCEEEECEECC
ASAAFAVHRS
CCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]