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The map label for this gene is ycbB [H]

Identifier: 83311306

GI number: 83311306

Start: 2404247

End: 2405854

Strand: Reverse

Name: ycbB [H]

Synonym: amb2207

Alternate gene names: 83311306

Gene position: 2405854-2404247 (Counterclockwise)

Preceding gene: 83311307

Following gene: 83311305

Centisome position: 48.44

GC content: 67.6

Gene sequence:

>1608_bases
GTGTTGTCGTCTCGCCCGCTCCTTTTCTCCCTGACCATGGGCCTTGCCGTTCTTGGCTGGGAAGCACCCTCACAGGCCCA
GTCCACCGCCGAAACCCAGCGCCGGATCGAAGCCGCGATCACCGCCGCGCCCCTGGCCGATCCGGCCCTGGAGGGCAAGG
CGCTGCGCGATTTCTATCGCGGGCGCCAGGGCCAGGCGGCCTGGAGCGGCGACAACGCCGCCCTGGCCCAGGCCCTGCTG
GCGCAGATCCGCGCCATGGCGACCGCCCAGGGATTGGAACCCGCCACCTACGCCCTGCCCGGTGGCGCGGGCGAGGTGGA
TTCGGACGTCCTGATCAGCGCCACCTTGCTGCGCTTTGGCCGCGACCTGGCCATCGGCGGCGTGCTGCCGGCCCGCAATG
TGGGCGGGTTTGGCGCAGAAACCCGGGGCGAATTCGACGGAGCGCGCTTCCTCAAGGCCCTGGCCGAGGGAAAGCCCCTG
GCTGAGCAGATGGAGGCCATTTCCCCCCAATATGTGGGCTACATCCGTCTACGCGATGGGTTGGAAAGGGCCCGCGCCAT
CGCTGCCGCCGGCGGTTGGCCGACCATTCCCGACGGCGCCAAGCTGGTTCCCGGCGAAACCGACGAGCGCGTGCCGCTGC
TGCGCCGCCGTCTGATCGCCTCGGGCGATCTGGCCGACGGCCTTGCCGAGGGCAAGATCTACGATGCCACCCTGGCCGAA
GCCGTGAAGCGCTTCCAGGCCCGGCACGGGCTGGACCCCGACGCTACCGTCGGCGGCAAGACCCTGGCCCACCTCAATGT
TCCGGCCGACGCCCGGGTTCGGCAGATCACCGCCAATCTGGAACGCTGGCGCTGGATGCCCCGCTCGTTCGGGCGCCACC
ATGTCGCCGTCAACATCGCCGCCCAGCAGATGGAAGTGGTGGAAGACGGCAGCGTCGCCATGGTGATGCGGGTGGTGGTG
GGTGACACCAAGCACCCCACTCCCAGCATGAACACCACCATGAGCTCGGTGGTGCTTAACCCCGCCTGGCGGGTGCCGAC
CAGCATCGCCAACAAGGAAATCCTGCCCAAGCTGCGCAAGGACCCCAATTACCTGACCAGCAGTAAGCTGCAGATCGTCG
ATTACCCCGAGGGCAGCCCGGAATCGGCGGGCGACGGTGTGGACTGGAACGCCATCGGCAAGAAGTTCCCCTATCGCCTG
CGCCAGCCGCCGGGTCCGGACAACGCGCTGGGCCAGTTGAAGTTCAACCTGACCGATTCCGACGACATCTACATGCATGA
CACGCCCAATCGCCGCGCCTTCAGCCGCTCGTACCGGGCGCTGTCGCATGGCTGCGTGCGGCTGGAGCGGCCGGTGGAAC
TGGGAGAACTGATGCTGGGGGCGCGCTGGCAGGGCAAGCTGGCTCACGACATCAACGCCAACCGGTCCACTCGGACCCTG
ATGCTGGAACGGACCATTCCCGTCTACCTGATGTATTGGACCGCCTGGGCGGACGAGAATGGCAACCTCCACTTCCGTGA
CGACCTGTACGGCCATGACAGACGGCTTATGACCGCCCTTGAACGGGCCCGGATTCCGGCGCAACGCCCCGCCTCCGGCA
GGTCCTGA

Upstream 100 bases:

>100_bases
TTGACACCCGGGCCGATTGGATCGATATCGAGTCGTAATGGAAGGAGTCTCCTTCCGCTAACGGTGTCGGTTGCCCGCAA
GCCGGGTCAGAGGTCCTACG

Downstream 100 bases:

>100_bases
CCAAGCGCACCTACCCGAAAGGGGGCAAAGGGGTAGTTGACTCCTCCCCGACCGAAAATGGTAATAAGGTCCTCACCCGA
GGGGGAGAGCCTCGGCCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MLSSRPLLFSLTMGLAVLGWEAPSQAQSTAETQRRIEAAITAAPLADPALEGKALRDFYRGRQGQAAWSGDNAALAQALL
AQIRAMATAQGLEPATYALPGGAGEVDSDVLISATLLRFGRDLAIGGVLPARNVGGFGAETRGEFDGARFLKALAEGKPL
AEQMEAISPQYVGYIRLRDGLERARAIAAAGGWPTIPDGAKLVPGETDERVPLLRRRLIASGDLADGLAEGKIYDATLAE
AVKRFQARHGLDPDATVGGKTLAHLNVPADARVRQITANLERWRWMPRSFGRHHVAVNIAAQQMEVVEDGSVAMVMRVVV
GDTKHPTPSMNTTMSSVVLNPAWRVPTSIANKEILPKLRKDPNYLTSSKLQIVDYPEGSPESAGDGVDWNAIGKKFPYRL
RQPPGPDNALGQLKFNLTDSDDIYMHDTPNRRAFSRSYRALSHGCVRLERPVELGELMLGARWQGKLAHDINANRSTRTL
MLERTIPVYLMYWTAWADENGNLHFRDDLYGHDRRLMTALERARIPAQRPASGRS

Sequences:

>Translated_535_residues
MLSSRPLLFSLTMGLAVLGWEAPSQAQSTAETQRRIEAAITAAPLADPALEGKALRDFYRGRQGQAAWSGDNAALAQALL
AQIRAMATAQGLEPATYALPGGAGEVDSDVLISATLLRFGRDLAIGGVLPARNVGGFGAETRGEFDGARFLKALAEGKPL
AEQMEAISPQYVGYIRLRDGLERARAIAAAGGWPTIPDGAKLVPGETDERVPLLRRRLIASGDLADGLAEGKIYDATLAE
AVKRFQARHGLDPDATVGGKTLAHLNVPADARVRQITANLERWRWMPRSFGRHHVAVNIAAQQMEVVEDGSVAMVMRVVV
GDTKHPTPSMNTTMSSVVLNPAWRVPTSIANKEILPKLRKDPNYLTSSKLQIVDYPEGSPESAGDGVDWNAIGKKFPYRL
RQPPGPDNALGQLKFNLTDSDDIYMHDTPNRRAFSRSYRALSHGCVRLERPVELGELMLGARWQGKLAHDINANRSTRTL
MLERTIPVYLMYWTAWADENGNLHFRDDLYGHDRRLMTALERARIPAQRPASGRS
>Mature_535_residues
MLSSRPLLFSLTMGLAVLGWEAPSQAQSTAETQRRIEAAITAAPLADPALEGKALRDFYRGRQGQAAWSGDNAALAQALL
AQIRAMATAQGLEPATYALPGGAGEVDSDVLISATLLRFGRDLAIGGVLPARNVGGFGAETRGEFDGARFLKALAEGKPL
AEQMEAISPQYVGYIRLRDGLERARAIAAAGGWPTIPDGAKLVPGETDERVPLLRRRLIASGDLADGLAEGKIYDATLAE
AVKRFQARHGLDPDATVGGKTLAHLNVPADARVRQITANLERWRWMPRSFGRHHVAVNIAAQQMEVVEDGSVAMVMRVVV
GDTKHPTPSMNTTMSSVVLNPAWRVPTSIANKEILPKLRKDPNYLTSSKLQIVDYPEGSPESAGDGVDWNAIGKKFPYRL
RQPPGPDNALGQLKFNLTDSDDIYMHDTPNRRAFSRSYRALSHGCVRLERPVELGELMLGARWQGKLAHDINANRSTRTL
MLERTIPVYLMYWTAWADENGNLHFRDDLYGHDRRLMTALERARIPAQRPASGRS

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=511, Percent_Identity=30.5283757338552, Blast_Score=201, Evalue=8e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 58458; Mature: 58458

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSRPLLFSLTMGLAVLGWEAPSQAQSTAETQRRIEAAITAAPLADPALEGKALRDFYR
CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHC
GRQGQAAWSGDNAALAQALLAQIRAMATAQGLEPATYALPGGAGEVDSDVLISATLLRFG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHCC
RDLAIGGVLPARNVGGFGAETRGEFDGARFLKALAEGKPLAEQMEAISPQYVGYIRLRDG
CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEHHHH
LERARAIAAAGGWPTIPDGAKLVPGETDERVPLLRRRLIASGDLADGLAEGKIYDATLAE
HHHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCHHHHHHCCCEEHHHHHH
AVKRFQARHGLDPDATVGGKTLAHLNVPADARVRQITANLERWRWMPRSFGRHHVAVNIA
HHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEEH
AQQMEVVEDGSVAMVMRVVVGDTKHPTPSMNTTMSSVVLNPAWRVPTSIANKEILPKLRK
HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHC
DPNYLTSSKLQIVDYPEGSPESAGDGVDWNAIGKKFPYRLRQPPGPDNALGQLKFNLTDS
CCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCHHCCCCCCCCCCCEEEEEEECCC
DDIYMHDTPNRRAFSRSYRALSHGCVRLERPVELGELMLGARWQGKLAHDINANRSTRTL
CCEEEECCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHCCCCCCCCHHCCCCCCCCEEE
MLERTIPVYLMYWTAWADENGNLHFRDDLYGHDRRLMTALERARIPAQRPASGRS
EEECCCCEEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLSSRPLLFSLTMGLAVLGWEAPSQAQSTAETQRRIEAAITAAPLADPALEGKALRDFYR
CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHC
GRQGQAAWSGDNAALAQALLAQIRAMATAQGLEPATYALPGGAGEVDSDVLISATLLRFG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHCC
RDLAIGGVLPARNVGGFGAETRGEFDGARFLKALAEGKPLAEQMEAISPQYVGYIRLRDG
CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEHHHH
LERARAIAAAGGWPTIPDGAKLVPGETDERVPLLRRRLIASGDLADGLAEGKIYDATLAE
HHHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCHHHHHHCCCEEHHHHHH
AVKRFQARHGLDPDATVGGKTLAHLNVPADARVRQITANLERWRWMPRSFGRHHVAVNIA
HHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEEH
AQQMEVVEDGSVAMVMRVVVGDTKHPTPSMNTTMSSVVLNPAWRVPTSIANKEILPKLRK
HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHC
DPNYLTSSKLQIVDYPEGSPESAGDGVDWNAIGKKFPYRLRQPPGPDNALGQLKFNLTDS
CCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCHHCCCCCCCCCCCEEEEEEECCC
DDIYMHDTPNRRAFSRSYRALSHGCVRLERPVELGELMLGARWQGKLAHDINANRSTRTL
CCEEEECCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHCCCCCCCCHHCCCCCCCCEEE
MLERTIPVYLMYWTAWADENGNLHFRDDLYGHDRRLMTALERARIPAQRPASGRS
EEECCCCEEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]