BacMap

Definition	Magnetospirillum magneticum AMB-1 chromosome, complete genome.
Accession	NC_007626
Length	4,967,148

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The map label for this gene is yciK [H]

Identifier: 83311187

GI number: 83311187

Start: 2264249

End: 2264968

Strand: Reverse

Name: yciK [H]

Synonym: amb2088

Alternate gene names: 83311187

Gene position: 2264968-2264249 (Counterclockwise)

Preceding gene: 83311188

Following gene: 83311186

Centisome position: 45.6

GC content: 71.81

Gene sequence:

>720_bases
ATGTCGGGACGCCTTGAGGGCCGCGTGGCCCTGGTCACCGGCGCCTCGCGCGGCATCGGAGCCGCCGTGGCCCGCCGCCT
CGCCGCCGAGGGGGCAGAAATCGTCGCCATCGCCCGCACCCAGGGGGCGCTGGAGGAACTGGACGACCAGATCCGCAAGG
CCGGCGGCAAGCCGCTGGTCCTGGTGCCGGAAGACCTGTGCAAGCCCGGCCTGATCGAGCAGGTGGCCGCCGCCATCTTC
CAGCGCTGGGCGCGGCTGGACATTCTGGTGGGCAATGCCGGCGCCATCGGCGGCGGGCTGACCCCGGTGGCCCAGCATGC
CCCCGATGATTGGGAAGAGGCCTTCGCCGTCAACGTCACCGCCAACTGGCGGCTGATCCGCGCCTGCGATCCCCTGCTGC
GCATGGCGCCCGCCGGGCGTGCGGTGTTCACCACCGCCGACGCGGCGCGCCATGCCGAACCGTTCTGGGGCGCCTATGCC
GCCTCCAAGGCGGCGCTGGAGACCATGGTCCGCACCTGGGCCGCCGAGATCGCCAACGTCACCTCGGTCAAGGCCAACCT
GCTGGACCCCGGCGTGGTGGCGACGCGGCTGCGCTCCATCGCCTTCCCCGGCGAGGACCCGGCCAAGCTGGCACAACCGG
ACGATGTGGCCGGTGCTTTTCTCGACCTTTGCCTGCCGGACTGCACCCGCCAGGGCGAGATCATCCGGACTAGTCCGTAA

Upstream 100 bases:

>100_bases
CCTGCTTCACCGGCGACTATCCGGTGGAGCCCACCGACTACATCAGCGCCGGCACCGATAACACCAAGCAGCTTTCCCTG
CTGACCGAGGACAGCCACTG

Downstream 100 bases:

>100_bases
GGTCTACCCCCTAGCCCCCGTTGCGGCTTCGTCACAATCGGTCACGTGGTGACGGAACGGGCTTGCGCCTGTGGCCGATC
ATGAGCTATCCCCATGGGGT

Product: dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSGRLEGRVALVTGASRGIGAAVARRLAAEGAEIVAIARTQGALEELDDQIRKAGGKPLVLVPEDLCKPGLIEQVAAAIF
QRWARLDILVGNAGAIGGGLTPVAQHAPDDWEEAFAVNVTANWRLIRACDPLLRMAPAGRAVFTTADAARHAEPFWGAYA
ASKAALETMVRTWAAEIANVTSVKANLLDPGVVATRLRSIAFPGEDPAKLAQPDDVAGAFLDLCLPDCTRQGEIIRTSP

Sequences:

>Translated_239_residues
MSGRLEGRVALVTGASRGIGAAVARRLAAEGAEIVAIARTQGALEELDDQIRKAGGKPLVLVPEDLCKPGLIEQVAAAIF
QRWARLDILVGNAGAIGGGLTPVAQHAPDDWEEAFAVNVTANWRLIRACDPLLRMAPAGRAVFTTADAARHAEPFWGAYA
ASKAALETMVRTWAAEIANVTSVKANLLDPGVVATRLRSIAFPGEDPAKLAQPDDVAGAFLDLCLPDCTRQGEIIRTSP
>Mature_238_residues
SGRLEGRVALVTGASRGIGAAVARRLAAEGAEIVAIARTQGALEELDDQIRKAGGKPLVLVPEDLCKPGLIEQVAAAIFQ
RWARLDILVGNAGAIGGGLTPVAQHAPDDWEEAFAVNVTANWRLIRACDPLLRMAPAGRAVFTTADAARHAEPFWGAYAA
SKAALETMVRTWAAEIANVTSVKANLLDPGVVATRLRSIAFPGEDPAKLAQPDDVAGAFLDLCLPDCTRQGEIIRTSP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=238, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=30.2788844621514, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI109715829, Length=234, Percent_Identity=31.1965811965812, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI4504505, Length=238, Percent_Identity=26.0504201680672, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI33667109, Length=211, Percent_Identity=31.7535545023697, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI20149619, Length=199, Percent_Identity=30.6532663316583, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI7657478, Length=230, Percent_Identity=29.1304347826087, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI126723191, Length=179, Percent_Identity=31.2849162011173, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1787526, Length=229, Percent_Identity=35.8078602620087, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1787335, Length=194, Percent_Identity=30.9278350515464, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787820, Length=201, Percent_Identity=28.3582089552239, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082100, Length=217, Percent_Identity=30.4147465437788, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=29.3877551020408, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786812, Length=237, Percent_Identity=27.0042194092827, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789378, Length=200, Percent_Identity=33, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082160, Length=200, Percent_Identity=27.5, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI2367175, Length=209, Percent_Identity=31.1004784688995, Blast_Score=65, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=246, Percent_Identity=27.6422764227642, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=218, Percent_Identity=27.9816513761468, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=238, Percent_Identity=30.672268907563, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17562990, Length=194, Percent_Identity=29.8969072164948, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=211, Percent_Identity=31.2796208530806, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=203, Percent_Identity=29.064039408867, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=206, Percent_Identity=30.5825242718447, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=200, Percent_Identity=31.5, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=199, Percent_Identity=27.6381909547739, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=235, Percent_Identity=26.8085106382979, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=225, Percent_Identity=27.5555555555556, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17531453, Length=207, Percent_Identity=31.8840579710145, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=194, Percent_Identity=27.8350515463918, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=27.9693486590038, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=236, Percent_Identity=27.1186440677966, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=200, Percent_Identity=33, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=213, Percent_Identity=27.2300469483568, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=140, Percent_Identity=31.4285714285714, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=198, Percent_Identity=28.2828282828283, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=199, Percent_Identity=30.6532663316583, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=197, Percent_Identity=27.4111675126904, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=232, Percent_Identity=26.2931034482759, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322227, Length=202, Percent_Identity=33.1683168316832, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6322226, Length=197, Percent_Identity=30.9644670050761, Blast_Score=79, Evalue=9e-16,
Organism=Saccharomyces cerevisiae, GI6323882, Length=216, Percent_Identity=32.4074074074074, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21355319, Length=211, Percent_Identity=33.175355450237, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28571526, Length=194, Percent_Identity=30.4123711340206, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21357041, Length=194, Percent_Identity=29.8969072164948, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI23397609, Length=218, Percent_Identity=34.4036697247706, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI116007236, Length=222, Percent_Identity=27.9279279279279, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24644339, Length=193, Percent_Identity=29.0155440414508, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI21358495, Length=238, Percent_Identity=26.890756302521, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24643142, Length=205, Percent_Identity=29.7560975609756, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI28571387, Length=230, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI18859837, Length=244, Percent_Identity=27.0491803278689, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25120; Mature: 24989

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRLEGRVALVTGASRGIGAAVARRLAAEGAEIVAIARTQGALEELDDQIRKAGGKPLV
CCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEE
LVPEDLCKPGLIEQVAAAIFQRWARLDILVGNAGAIGGGLTPVAQHAPDDWEEAFAVNVT
EECHHHCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHCCCCCCHHEEEEEEE
ANWRLIRACDPLLRMAPAGRAVFTTADAARHAEPFWGAYAASKAALETMVRTWAAEIANV
CCEEEHHHHCHHHHHCCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TSVKANLLDPGVVATRLRSIAFPGEDPAKLAQPDDVAGAFLDLCLPDCTRQGEIIRTSP
HHHHHHHCCCHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCEEECCC
>Mature Secondary Structure 
SGRLEGRVALVTGASRGIGAAVARRLAAEGAEIVAIARTQGALEELDDQIRKAGGKPLV
CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEE
LVPEDLCKPGLIEQVAAAIFQRWARLDILVGNAGAIGGGLTPVAQHAPDDWEEAFAVNVT
EECHHHCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHCCCCCCHHEEEEEEE
ANWRLIRACDPLLRMAPAGRAVFTTADAARHAEPFWGAYAASKAALETMVRTWAAEIANV
CCEEEHHHHCHHHHHCCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TSVKANLLDPGVVATRLRSIAFPGEDPAKLAQPDDVAGAFLDLCLPDCTRQGEIIRTSP
HHHHHHHCCCHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]