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The map label for this gene is ymdB [C]

Identifier: 83311184

GI number: 83311184

Start: 2261760

End: 2262278

Strand: Reverse

Name: ymdB [C]

Synonym: amb2085

Alternate gene names: 83311184

Gene position: 2262278-2261760 (Counterclockwise)

Preceding gene: 83311185

Following gene: 83311181

Centisome position: 45.54

GC content: 68.98

Gene sequence:

>519_bases
ATGGACCAATCCAGGACGAGGGTGGTCGAAGCCGACATCACCCGCCTTGCCGTGGATGCCATCGTCAACGCCGCCAATTC
GTCGCTGCTGGGCGGCGGCGGCGTAGACGGGGCCATCCATCGGGCCGCCGGGCCGCAATTGCTGGAGGCCTGCCGGGCCT
TGTGCGGCTGCGCCACCGGCGATGCTCGGATCACCCCCGGTTTCCGCCTGCCCGCCCGCTGGGTGATTCATGCGGTGGGG
CCGGTGTGGAAAGGCGGTGAGCAGGGCGAGGCCGACTTGCTGCGCTCGTGTTATCGCCGCTCGCTGGAACTGGCGGTGGA
GGCCGGGGCACGCACCATCGCCTTCCCGGCCATCTCCACCGGAATCTACGCCTACCCCAAGGACGAGGCCGCTCGCATCG
CCATCGCGGCGGTGCGGTCATTCCTGAGCGGATGCGATCTCTTGGACGAGGTGGTGTTCTGCTGCTTCGCCCCCGACAGC
CTGGACGCCCACCGGCGAGCGCTCTACCTGAGGGACTGA

Upstream 100 bases:

>100_bases
ACATCATCCGGGGCGGTAAGGGCATGTGCTATATTCGCGATCCCGACGGCGCCATCATCGAATTGTGCCAGTACGGGCTG
GAGCAGCCGGAGTTCCGCTG

Downstream 100 bases:

>100_bases
CTCAGATCCATTCCGGCAGGCTTTGACACCGGCCCTGCCCTGGTGGATGTGGCCGCCCCCAGACGGAGGGCCAGCGGGCG
CAGGGCATCGACGGCGGCAG

Product: phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MDQSRTRVVEADITRLAVDAIVNAANSSLLGGGGVDGAIHRAAGPQLLEACRALCGCATGDARITPGFRLPARWVIHAVG
PVWKGGEQGEADLLRSCYRRSLELAVEAGARTIAFPAISTGIYAYPKDEAARIAIAAVRSFLSGCDLLDEVVFCCFAPDS
LDAHRRALYLRD

Sequences:

>Translated_172_residues
MDQSRTRVVEADITRLAVDAIVNAANSSLLGGGGVDGAIHRAAGPQLLEACRALCGCATGDARITPGFRLPARWVIHAVG
PVWKGGEQGEADLLRSCYRRSLELAVEAGARTIAFPAISTGIYAYPKDEAARIAIAAVRSFLSGCDLLDEVVFCCFAPDS
LDAHRRALYLRD
>Mature_172_residues
MDQSRTRVVEADITRLAVDAIVNAANSSLLGGGGVDGAIHRAAGPQLLEACRALCGCATGDARITPGFRLPARWVIHAVG
PVWKGGEQGEADLLRSCYRRSLELAVEAGARTIAFPAISTGIYAYPKDEAARIAIAAVRSFLSGCDLLDEVVFCCFAPDS
LDAHRRALYLRD

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI13569840, Length=168, Percent_Identity=51.1904761904762, Blast_Score=164, Evalue=2e-41,
Organism=Homo sapiens, GI117968621, Length=159, Percent_Identity=50.9433962264151, Blast_Score=162, Evalue=2e-40,
Organism=Homo sapiens, GI207450721, Length=175, Percent_Identity=36, Blast_Score=103, Evalue=7e-23,
Organism=Homo sapiens, GI8923143, Length=148, Percent_Identity=39.1891891891892, Blast_Score=103, Evalue=8e-23,
Organism=Homo sapiens, GI154813199, Length=137, Percent_Identity=37.956204379562, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI20336746, Length=163, Percent_Identity=30.6748466257669, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI226371718, Length=140, Percent_Identity=33.5714285714286, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371716, Length=140, Percent_Identity=33.5714285714286, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371714, Length=140, Percent_Identity=33.5714285714286, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371712, Length=140, Percent_Identity=33.5714285714286, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371710, Length=140, Percent_Identity=33.5714285714286, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371706, Length=140, Percent_Identity=33.5714285714286, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI93141018, Length=166, Percent_Identity=27.710843373494, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI93141020, Length=166, Percent_Identity=28.3132530120482, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI4758496, Length=166, Percent_Identity=28.3132530120482, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1787283, Length=170, Percent_Identity=52.3529411764706, Blast_Score=170, Evalue=5e-44,
Organism=Caenorhabditis elegans, GI17538214, Length=171, Percent_Identity=46.7836257309941, Blast_Score=142, Evalue=7e-35,
Organism=Drosophila melanogaster, GI24586353, Length=154, Percent_Identity=37.012987012987, Blast_Score=93, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18271; Mature: 18271

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQSRTRVVEADITRLAVDAIVNAANSSLLGGGGVDGAIHRAAGPQLLEACRALCGCATG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCC
DARITPGFRLPARWVIHAVGPVWKGGEQGEADLLRSCYRRSLELAVEAGARTIAFPAIST
CCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECHHHHC
GIYAYPKDEAARIAIAAVRSFLSGCDLLDEVVFCCFAPDSLDAHRRALYLRD
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEECCC
>Mature Secondary Structure
MDQSRTRVVEADITRLAVDAIVNAANSSLLGGGGVDGAIHRAAGPQLLEACRALCGCATG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCC
DARITPGFRLPARWVIHAVGPVWKGGEQGEADLLRSCYRRSLELAVEAGARTIAFPAIST
CCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECHHHHC
GIYAYPKDEAARIAIAAVRSFLSGCDLLDEVVFCCFAPDSLDAHRRALYLRD
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]