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The map label for this gene is ykfC [C]

Identifier: 83310593

GI number: 83310593

Start: 1632862

End: 1634274

Strand: Reverse

Name: ykfC [C]

Synonym: amb1494

Alternate gene names: 83310593

Gene position: 1634274-1632862 (Counterclockwise)

Preceding gene: 83310594

Following gene: 83310592

Centisome position: 32.9

GC content: 67.23

Gene sequence:

>1413_bases
ATGCCCGAAGGTCAAGGCCTTCGCGCCCGTGCGCATCATTTGGTCGGGGTAGCGGCCCCTCCCGATGCATACGGGGTCGC
TCCAGGCGCCGATGGGATACGGCGGGTGCTCCCCCGCGCGTCCCGGCGCAGCTCGGCCGGCGTCGATGAGGGGACTCAAT
CGCCGGCCCGGCCTGTACACCCCCGACAGGACTTGGTCCGGCTACGCCTGGCTGCAGAACTTCAACAACGGCAACCAGAA
CAACAACAACAAGAACAACAGAAACCGGGTCCGAGCCGTCCGCACATGATCACGCAACAGCCGTCAGACATCACCGTGTC
CCAGCTTTTCGAGGCCTATTACGACTGCCGGCGCCACAAGCGCAACACGGCTTCCGCCCTGGACTTCGAGATGGTGCTGG
AAAACAACCTGATGGACCTGCTGGCCGAGCTGCAGGCAGGCACCTGGATGCCGGGACCGGCGACCGTCTTCGCCATCACC
CGCCCCAGGCCGCGCGAGGTGTGGGCCGCCCAGTTCCGCGACCGCATCGTCCACCACCTGGTCTACCGCGCCATCAACCC
GCTGTTCGAGCCGGCGTTCATCGCCGATTCCTGCGCCTGCATCAAGGGGCGCGGCACGCTGTACGGCGCCGAGCGCCTGC
ACCGCCACCTACGCTCGGCCACCGAGAACTGGAGCAAGCCGGCCTTCTATCTGAAAGCCGACATCGCCAATTTCTTCGGA
TCGATCCGCCACGCCGACCTGTTCGCCATGCTGGCCCGCCGGATCAAGGACCCCACCATGCTGGAATTGTGCCGCAAGCT
GGTGTTCCAGGACGTGCGCCGGGATGCCATCGTCAAGGACGGCGCCGGAACCCTGGCCCTGGTTCCGCCGCACAAAAGCC
TGTTCCAGGCACTGCCCGGCATCGGCTTGCCCATCGGCAACCTGAGCAGCCAGTTCTTCGCCAACGTCTACCTGGACGGC
CTGGACCAGATGATCAAGCGCCGCCTCGGCATGCGCCACTACGTCCGCTATGTCGACGACATGGTGCTGATCCACCCCGA
GTCCAAGGCGCTGCTGTCCGCCGCCGAGGCCATCCGGGACCACCTGTCCGGAATCGGCCTGAAGCTTGCCGAGCACAAGA
CCTTCGTGGCGCCGGTCACCAAGGGCGTCGATTTCGTCGGCCACGTCATCCGCCCGCACCGCCGCCAGGGCCGCCCCAGA
ACCCACCGCGCCGCCCTGCGCCGGCTGATGGAGATCCCGGCCGAGGACTTCATGCCGTCCTGCAACAGCTATCTCGGCCT
GTTCCGCCACGGCGGCAGCCGCAACCAGATCATCGCGCTCGCCCGGATCGCGCTCCGGCGCCGCCACTGGGTGGCCGCCG
ACCTGACCAAGGTGGGCGCCCGCCGCATCCCCACGCGGAGGACCGAGCCATGA

Upstream 100 bases:

>100_bases
TTCACCTGATCTCCCCCAAGCAATTCGGGGACACGGTGGAACTGACCACCGGCGTCGGCAAGCAGGCGACGGCATGGCTG
AAATACGCGAGGAGCGCCTG

Downstream 100 bases:

>100_bases
CCACGTCCGCACCGCACGACGACACCGTCCCGCCGGCAGAACTGCCGCCGCAGTGCCACGACTGCATCAATTCCACCGCC
CGGGGCCACGTCTGCCTGGA

Product: retron-type reverse transcriptase

Products: NA

Alternate protein names: Retron-Type Reverse Transcriptase; Reverse Transcriptase Family Protein; Reverse Transcriptase; CRISPR-Associated Protein; Group II Intron Maturase; Reverse Transcriptase/Maturase; Group II Intron Maturase-Specific Domain Family; RNA-Directed DNA Polymerase Retrotranscriptase; Phage-Encoded Reverse Transcriptase

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MPEGQGLRARAHHLVGVAAPPDAYGVAPGADGIRRVLPRASRRSSAGVDEGTQSPARPVHPRQDLVRLRLAAELQQRQPE
QQQQEQQKPGPSRPHMITQQPSDITVSQLFEAYYDCRRHKRNTASALDFEMVLENNLMDLLAELQAGTWMPGPATVFAIT
RPRPREVWAAQFRDRIVHHLVYRAINPLFEPAFIADSCACIKGRGTLYGAERLHRHLRSATENWSKPAFYLKADIANFFG
SIRHADLFAMLARRIKDPTMLELCRKLVFQDVRRDAIVKDGAGTLALVPPHKSLFQALPGIGLPIGNLSSQFFANVYLDG
LDQMIKRRLGMRHYVRYVDDMVLIHPESKALLSAAEAIRDHLSGIGLKLAEHKTFVAPVTKGVDFVGHVIRPHRRQGRPR
THRAALRRLMEIPAEDFMPSCNSYLGLFRHGGSRNQIIALARIALRRRHWVAADLTKVGARRIPTRRTEP

Sequences:

>Translated_470_residues
MPEGQGLRARAHHLVGVAAPPDAYGVAPGADGIRRVLPRASRRSSAGVDEGTQSPARPVHPRQDLVRLRLAAELQQRQPE
QQQQEQQKPGPSRPHMITQQPSDITVSQLFEAYYDCRRHKRNTASALDFEMVLENNLMDLLAELQAGTWMPGPATVFAIT
RPRPREVWAAQFRDRIVHHLVYRAINPLFEPAFIADSCACIKGRGTLYGAERLHRHLRSATENWSKPAFYLKADIANFFG
SIRHADLFAMLARRIKDPTMLELCRKLVFQDVRRDAIVKDGAGTLALVPPHKSLFQALPGIGLPIGNLSSQFFANVYLDG
LDQMIKRRLGMRHYVRYVDDMVLIHPESKALLSAAEAIRDHLSGIGLKLAEHKTFVAPVTKGVDFVGHVIRPHRRQGRPR
THRAALRRLMEIPAEDFMPSCNSYLGLFRHGGSRNQIIALARIALRRRHWVAADLTKVGARRIPTRRTEP
>Mature_469_residues
PEGQGLRARAHHLVGVAAPPDAYGVAPGADGIRRVLPRASRRSSAGVDEGTQSPARPVHPRQDLVRLRLAAELQQRQPEQ
QQQEQQKPGPSRPHMITQQPSDITVSQLFEAYYDCRRHKRNTASALDFEMVLENNLMDLLAELQAGTWMPGPATVFAITR
PRPREVWAAQFRDRIVHHLVYRAINPLFEPAFIADSCACIKGRGTLYGAERLHRHLRSATENWSKPAFYLKADIANFFGS
IRHADLFAMLARRIKDPTMLELCRKLVFQDVRRDAIVKDGAGTLALVPPHKSLFQALPGIGLPIGNLSSQFFANVYLDGL
DQMIKRRLGMRHYVRYVDDMVLIHPESKALLSAAEAIRDHLSGIGLKLAEHKTFVAPVTKGVDFVGHVIRPHRRQGRPRT
HRAALRRLMEIPAEDFMPSCNSYLGLFRHGGSRNQIIALARIALRRRHWVAADLTKVGARRIPTRRTEP

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52921; Mature: 52790

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEGQGLRARAHHLVGVAAPPDAYGVAPGADGIRRVLPRASRRSSAGVDEGTQSPARPVH
CCCCCCCHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PRQDLVRLRLAAELQQRQPEQQQQEQQKPGPSRPHMITQQPSDITVSQLFEAYYDCRRHK
CHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
RNTASALDFEMVLENNLMDLLAELQAGTWMPGPATVFAITRPRPREVWAAQFRDRIVHHL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
VYRAINPLFEPAFIADSCACIKGRGTLYGAERLHRHLRSATENWSKPAFYLKADIANFFG
HHHHHHHHHCCHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH
SIRHADLFAMLARRIKDPTMLELCRKLVFQDVRRDAIVKDGAGTLALVPPHKSLFQALPG
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHCCC
IGLPIGNLSSQFFANVYLDGLDQMIKRRLGMRHYVRYVDDMVLIHPESKALLSAAEAIRD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHH
HLSGIGLKLAEHKTFVAPVTKGVDFVGHVIRPHRRQGRPRTHRAALRRLMEIPAEDFMPS
HHHHCCCCHHCCCHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCCHHHHCCC
CNSYLGLFRHGGSRNQIIALARIALRRRHWVAADLTKVGARRIPTRRTEP
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PEGQGLRARAHHLVGVAAPPDAYGVAPGADGIRRVLPRASRRSSAGVDEGTQSPARPVH
CCCCCCHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PRQDLVRLRLAAELQQRQPEQQQQEQQKPGPSRPHMITQQPSDITVSQLFEAYYDCRRHK
CHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
RNTASALDFEMVLENNLMDLLAELQAGTWMPGPATVFAITRPRPREVWAAQFRDRIVHHL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
VYRAINPLFEPAFIADSCACIKGRGTLYGAERLHRHLRSATENWSKPAFYLKADIANFFG
HHHHHHHHHCCHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH
SIRHADLFAMLARRIKDPTMLELCRKLVFQDVRRDAIVKDGAGTLALVPPHKSLFQALPG
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHCCC
IGLPIGNLSSQFFANVYLDGLDQMIKRRLGMRHYVRYVDDMVLIHPESKALLSAAEAIRD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHH
HLSGIGLKLAEHKTFVAPVTKGVDFVGHVIRPHRRQGRPRTHRAALRRLMEIPAEDFMPS
HHHHCCCCHHCCCHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCCHHHHCCC
CNSYLGLFRHGGSRNQIIALARIALRRRHWVAADLTKVGARRIPTRRTEP
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA