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The map label for this gene is csd [H]

Identifier: 83310154

GI number: 83310154

Start: 1117610

End: 1118113

Strand: Reverse

Name: csd [H]

Synonym: amb1055

Alternate gene names: 83310154

Gene position: 1118113-1117610 (Counterclockwise)

Preceding gene: 83310160

Following gene: 83310151

Centisome position: 22.51

GC content: 65.48

Gene sequence:

>504_bases
GTGCGGCTCCTGCTTCAGGCCGGCGCCACCACCCAGAAGCCGCGCCAGGTGATCGAACGCCTGACGCGCTATTACGAGCA
CGAGAACTCCAACATCCACCGCGCCGCCCATGCCCTGGCGGCCCGCTCTACCGACGCCTACGAGGCGGCCCGTGAAAAGA
CCCGGCGCATTCTCAATGCCGGCTCCACCGAGGAGATCGTCGTCACCTGGATGGAGCTCCACGCCAACATCGCGCCCTGG
CATCAATGGCTGCCGCACCGAGGACATCGGCAAGGCCCTCGACGGCGAGGGCCTTGCCGTGCGCTCCGGCCATCACTGCG
CCCAGCCCATCCTGCGCCGCTTCAGCGTGGAATCCACGGTGACGCCTCCCGTCGGGGCGGGGAGCGTAAATCCTTGTCTG
TCATCCTGAGCGCAAGCCAAGGATCTTTCAGCCTGAAGCGGCCGACGCCTTGGCTTGAAAGCCCCTTCGCCAAGGCTCAG
GGTGACAGCTTGTTTCTGATTTAG

Upstream 100 bases:

>100_bases
CCAGCAGACCCATGCGGGCATAGACCCACGACCCGGTGCAGACGGAGGTCAGCCGGCGAGTCTCCGGCAGGTCACGGACA
TAGTCGTGGAGGCGGCGGTT

Downstream 100 bases:

>100_bases
CGCACGATACTTCAGATGTCGTACATCAGCACCGTTTCGGCGCGCGCCTTGCTGACCCGCATGTCGGCCAGCGAGGTGTT
GTCGGGAATGGCGGCGATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MRLLLQAGATTQKPRQVIERLTRYYEHENSNIHRAAHALAARSTDAYEAAREKTRRILNAGSTEEIVVTWMELHANIAPW
HQWLPHRGHRQGPRRRGPCRALRPSLRPAHPAPLQRGIHGDASRRGGERKSLSVILSASQGSFSLKRPTPWLESPFAKAQ
GDSLFLI

Sequences:

>Translated_167_residues
MRLLLQAGATTQKPRQVIERLTRYYEHENSNIHRAAHALAARSTDAYEAAREKTRRILNAGSTEEIVVTWMELHANIAPW
HQWLPHRGHRQGPRRRGPCRALRPSLRPAHPAPLQRGIHGDASRRGGERKSLSVILSASQGSFSLKRPTPWLESPFAKAQ
GDSLFLI
>Mature_167_residues
MRLLLQAGATTQKPRQVIERLTRYYEHENSNIHRAAHALAARSTDAYEAAREKTRRILNAGSTEEIVVTWMELHANIAPW
HQWLPHRGHRQGPRRRGPCRALRPSLRPAHPAPLQRGIHGDASRRGGERKSLSVILSASQGSFSLKRPTPWLESPFAKAQ
GDSLFLI

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 18870; Mature: 18870

Theoretical pI: Translated: 11.90; Mature: 11.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLQAGATTQKPRQVIERLTRYYEHENSNIHRAAHALAARSTDAYEAAREKTRRILNA
CCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
GSTEEIVVTWMELHANIAPWHQWLPHRGHRQGPRRRGPCRALRPSLRPAHPAPLQRGIHG
CCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHCCCC
DASRRGGERKSLSVILSASQGSFSLKRPTPWLESPFAKAQGDSLFLI
CHHHCCCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure
MRLLLQAGATTQKPRQVIERLTRYYEHENSNIHRAAHALAARSTDAYEAAREKTRRILNA
CCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
GSTEEIVVTWMELHANIAPWHQWLPHRGHRQGPRRRGPCRALRPSLRPAHPAPLQRGIHG
CCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHCCCC
DASRRGGERKSLSVILSASQGSFSLKRPTPWLESPFAKAQGDSLFLI
CHHHCCCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]