Click here to switch to the map view.

The map label for this gene is petR [H]

Identifier: 83309648

GI number: 83309648

Start: 595754

End: 596437

Strand: Reverse

Name: petR [H]

Synonym: amb0549

Alternate gene names: 83309648

Gene position: 596437-595754 (Counterclockwise)

Preceding gene: 83309649

Following gene: 83309647

Centisome position: 12.01

GC content: 66.81

Gene sequence:

>684_bases
ATGGACGACGCCCATATCCTGGTAGTGGACGATGACCGGCGGCTGCGCGAATTGCTGCGCAAATACCTGTCCGACAACGG
CTATCTGGTGGCCACCGCCGCCGATGCCGCCGAGGCACGGCAATGCATGGCCGGCCTGGCTTTCGACATGATGGTTCTCG
ACGTCATGATGCCGGGGGAGGATGGCATGGCGCTCACCCGCTCGCTCCGGGCCGAGGGCAACGGCCTGCCCATCCTGCTG
CTGACGGCGCGCGGCGAGGTGGATGACCGCATCAAGGGGCTGGAATCCGGGGCCGACGATTATCTGTCCAAGCCGTTCGA
ACCCCGCGAACTGCTGCTGCGGGTCGCCTCCATCCTGCGCCGCAGCCCCCGTGACGAGCCCGAGCCCACCCGCGAGCTTC
GACTGGGTGCCTTCGTCTGGGACATGGGACGCGCCGAGCTGCGCCAGGACGACCAGCCCGTTCATCTGACCCAGGCCGAG
CGTGACCTGCTGTCCATCCTGGCCGAGGTCTCCGGCCAGGGGGTGTCGCGTGACGATCTGGCGGCGCGAACGGGAAACTC
GGCCAATCCCCGCACAGTCGACGTCCAGGTGACCCGGCTGCGCAAGAAGATCGAGGACGACCCGAAAATGCCGCGCTATC
TTCAGACAGTGCGCGGCATGGGCTATATGCTGCGACCCGACTGA

Upstream 100 bases:

>100_bases
GTGGAGGGCTTCCGCAAGGTGATGCTGGGCCTGGTGGACGAGGCCGACCGCGGCCGCTTCCCCGCCCGCGCCGCCGGACT
GCGCCGGGGAGCCTGACCCC

Downstream 100 bases:

>100_bases
CCGGAAATTCCGGCGTTTGAGAGGCCTTCTGGAATGTCTCATCTCGGGCGGTGGCTGAAGCGTCTGGCCCCCCAGGGTCT
GCTGGGGCGATCCCTGCTGA

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MDDAHILVVDDDRRLRELLRKYLSDNGYLVATAADAAEARQCMAGLAFDMMVLDVMMPGEDGMALTRSLRAEGNGLPILL
LTARGEVDDRIKGLESGADDYLSKPFEPRELLLRVASILRRSPRDEPEPTRELRLGAFVWDMGRAELRQDDQPVHLTQAE
RDLLSILAEVSGQGVSRDDLAARTGNSANPRTVDVQVTRLRKKIEDDPKMPRYLQTVRGMGYMLRPD

Sequences:

>Translated_227_residues
MDDAHILVVDDDRRLRELLRKYLSDNGYLVATAADAAEARQCMAGLAFDMMVLDVMMPGEDGMALTRSLRAEGNGLPILL
LTARGEVDDRIKGLESGADDYLSKPFEPRELLLRVASILRRSPRDEPEPTRELRLGAFVWDMGRAELRQDDQPVHLTQAE
RDLLSILAEVSGQGVSRDDLAARTGNSANPRTVDVQVTRLRKKIEDDPKMPRYLQTVRGMGYMLRPD
>Mature_227_residues
MDDAHILVVDDDRRLRELLRKYLSDNGYLVATAADAAEARQCMAGLAFDMMVLDVMMPGEDGMALTRSLRAEGNGLPILL
LTARGEVDDRIKGLESGADDYLSKPFEPRELLLRVASILRRSPRDEPEPTRELRLGAFVWDMGRAELRQDDQPVHLTQAE
RDLLSILAEVSGQGVSRDDLAARTGNSANPRTVDVQVTRLRKKIEDDPKMPRYLQTVRGMGYMLRPD

Specific function: Necessary for photosynthetic and respiratory growth. Probable promoter-specific protein mediating the interaction between DNA and RNA polymerase [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=233, Percent_Identity=44.6351931330472, Blast_Score=199, Evalue=9e-53,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=35.8407079646018, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1787229, Length=231, Percent_Identity=36.3636363636364, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=39.647577092511, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=33.3333333333333, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI87082012, Length=220, Percent_Identity=34.5454545454545, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787375, Length=223, Percent_Identity=35.8744394618834, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=34.9775784753363, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788394, Length=229, Percent_Identity=33.6244541484716, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1790860, Length=229, Percent_Identity=35.3711790393013, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1790552, Length=222, Percent_Identity=35.1351351351351, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1786911, Length=223, Percent_Identity=32.2869955156951, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1789402, Length=222, Percent_Identity=30.6306306306306, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI145693140, Length=233, Percent_Identity=32.1888412017167, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1790299, Length=187, Percent_Identity=28.8770053475936, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788550, Length=185, Percent_Identity=27.5675675675676, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI145693157, Length=104, Percent_Identity=40.3846153846154, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790437, Length=106, Percent_Identity=35.8490566037736, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787487, Length=103, Percent_Identity=33.0097087378641, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1788713, Length=101, Percent_Identity=39.6039603960396, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788905, Length=189, Percent_Identity=27.5132275132275, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788191, Length=120, Percent_Identity=30, Blast_Score=61, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=102, Percent_Identity=32.3529411764706, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25461; Mature: 25461

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDAHILVVDDDRRLRELLRKYLSDNGYLVATAADAAEARQCMAGLAFDMMVLDVMMPGE
CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCC
DGMALTRSLRAEGNGLPILLLTARGEVDDRIKGLESGADDYLSKPFEPRELLLRVASILR
CCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHH
RSPRDEPEPTRELRLGAFVWDMGRAELRQDDQPVHLTQAERDLLSILAEVSGQGVSRDDL
HCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCCCCHHHH
AARTGNSANPRTVDVQVTRLRKKIEDDPKMPRYLQTVRGMGYMLRPD
HHHCCCCCCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHCCCEEECCC
>Mature Secondary Structure
MDDAHILVVDDDRRLRELLRKYLSDNGYLVATAADAAEARQCMAGLAFDMMVLDVMMPGE
CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCC
DGMALTRSLRAEGNGLPILLLTARGEVDDRIKGLESGADDYLSKPFEPRELLLRVASILR
CCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHH
RSPRDEPEPTRELRLGAFVWDMGRAELRQDDQPVHLTQAERDLLSILAEVSGQGVSRDDL
HCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCCCCHHHH
AARTGNSANPRTVDVQVTRLRKKIEDDPKMPRYLQTVRGMGYMLRPD
HHHCCCCCCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1323023 [H]