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The map label for this gene is flgD [H]

Identifier: 83309604

GI number: 83309604

Start: 541612

End: 542436

Strand: Reverse

Name: flgD [H]

Synonym: amb0505

Alternate gene names: 83309604

Gene position: 542436-541612 (Counterclockwise)

Preceding gene: 83309605

Following gene: 83309603

Centisome position: 10.92

GC content: 64.36

Gene sequence:

>825_bases
ATGACCACCGTCGACACCTCCGCCACCAACGCCGCAACGGCCTCGGCCGCCACGGGCTCCGCCGCCGGCAAGGCCACGCT
GGGCAGCAACTTCAATACCTTCCTGACCATGCTGACCACTCAGCTGAAGCATCAGGACCCGCTGTCGCCCATGGACTCGA
CCCAGTTCACCAACCAGCTGGTCCAGTTCTCCAGCGTCGAGCAGCAGATCAACGCCAATTCCAACCTGGAAAAGCTGATC
AAGCTGCAGCAGACCGCCCAGACCTCCCAGGGCATCAGCTATCTCGGCCAGACCGTCGAGGTGTCGGGCACCGACCTGCC
GCTGCAAGACAGCGCCGCCTCGCTGACCTACACCCTGCCCAAGGAAGCCCGCGACGTGAAAATCGTGATCAAGGATTCCA
CCGGCAAGCAGGTCAATTCCATCGCCGGCGAGACCGCCTCGGGCGCCCATAGCCTCAGCTGGAACGGCAAGGACTCGTCG
GGCACCCAGCTCGATGACGGCCGCTATTCCTTCCAGGTGGTGGCCACCGCCGCCGACGGCACCTCCATCACCACCACCAG
CACCAGCTTCGGCCGGGTGACCAAGGTGACCAACGACGCCACCAACGGCACCACCCTGGTGATGGGCGCCGGGACCAAGG
GCAACGACATCACCCTGACCATGGATAAGGTGGTCAGCGTCAAGGACAACCAGTCCAGCATCAACAACGCGCAGTTGGCC
GCCGCCAACGCCCAGTATCAGGCCGCGCTGGCGCAACTTCAGGCGCTGCAGGGCTCTTCGAACAACTCTAGCTCGTCGAG
CGGCTCCAGCTCGACCGGCCAGTAG

Upstream 100 bases:

>100_bases
ACGAGGCCCAGCTGGCCGGCGCCGGCGCGGCCCAGGCCGCGCGGAGCCGGACCCTCGGCGGACGCTCCGGCGTCGACATC
TCGGTGTAGGAGCAACGCCC

Downstream 100 bases:

>100_bases
AATTTAGGATCAGGAGGATATCATGAGCTTGTACGGCGCATTGTTCTCGGGTGTCTCCGGTCTGGCCTCTCAGTCCAGCG
CGATGGGAGCCATTTCGGAC

Product: flagellar hook capping protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MTTVDTSATNAATASAATGSAAGKATLGSNFNTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLI
KLQQTAQTSQGISYLGQTVEVSGTDLPLQDSAASLTYTLPKEARDVKIVIKDSTGKQVNSIAGETASGAHSLSWNGKDSS
GTQLDDGRYSFQVVATAADGTSITTTSTSFGRVTKVTNDATNGTTLVMGAGTKGNDITLTMDKVVSVKDNQSSINNAQLA
AANAQYQAALAQLQALQGSSNNSSSSSGSSSTGQ

Sequences:

>Translated_274_residues
MTTVDTSATNAATASAATGSAAGKATLGSNFNTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLI
KLQQTAQTSQGISYLGQTVEVSGTDLPLQDSAASLTYTLPKEARDVKIVIKDSTGKQVNSIAGETASGAHSLSWNGKDSS
GTQLDDGRYSFQVVATAADGTSITTTSTSFGRVTKVTNDATNGTTLVMGAGTKGNDITLTMDKVVSVKDNQSSINNAQLA
AANAQYQAALAQLQALQGSSNNSSSSSGSSSTGQ
>Mature_273_residues
TTVDTSATNAATASAATGSAAGKATLGSNFNTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLIK
LQQTAQTSQGISYLGQTVEVSGTDLPLQDSAASLTYTLPKEARDVKIVIKDSTGKQVNSIAGETASGAHSLSWNGKDSSG
TQLDDGRYSFQVVATAADGTSITTTSTSFGRVTKVTNDATNGTTLVMGAGTKGNDITLTMDKVVSVKDNQSSINNAQLAA
ANAQYQAALAQLQALQGSSNNSSSSSGSSSTGQ

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=200, Percent_Identity=31, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 28240; Mature: 28109

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTVDTSATNAATASAATGSAAGKATLGSNFNTFLTMLTTQLKHQDPLSPMDSTQFTNQL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
VQFSSVEQQINANSNLEKLIKLQQTAQTSQGISYLGQTVEVSGTDLPLQDSAASLTYTLP
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEECC
KEARDVKIVIKDSTGKQVNSIAGETASGAHSLSWNGKDSSGTQLDDGRYSFQVVATAADG
CCCCEEEEEEECCCCCHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCC
TSITTTSTSFGRVTKVTNDATNGTTLVMGAGTKGNDITLTMDKVVSVKDNQSSINNAQLA
CEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEHHHEEEECCCCCCCCCCEEE
AANAQYQAALAQLQALQGSSNNSSSSSGSSSTGQ
ECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TTVDTSATNAATASAATGSAAGKATLGSNFNTFLTMLTTQLKHQDPLSPMDSTQFTNQL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
VQFSSVEQQINANSNLEKLIKLQQTAQTSQGISYLGQTVEVSGTDLPLQDSAASLTYTLP
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEECC
KEARDVKIVIKDSTGKQVNSIAGETASGAHSLSWNGKDSSGTQLDDGRYSFQVVATAADG
CCCCEEEEEEECCCCCHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCC
TSITTTSTSFGRVTKVTNDATNGTTLVMGAGTKGNDITLTMDKVVSVKDNQSSINNAQLA
CEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEHHHEEEECCCCCCCCCCEEE
AANAQYQAALAQLQALQGSSNNSSSSSGSSSTGQ
ECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]