Click here to switch to the map view.

The map label for this gene is rarD [C]

Identifier: 82752274

GI number: 82752274

Start: 2725928

End: 2726836

Strand: Reverse

Name: rarD [C]

Synonym: SAB2572c

Alternate gene names: 82752274

Gene position: 2726836-2725928 (Counterclockwise)

Preceding gene: 82752278

Following gene: 82752270

Centisome position: 99.43

GC content: 33.77

Gene sequence:

>909_bases
GTGAATACAGAATATAAAAAAGGTATATTTTTAGCACTTAGTGCTTACATTCTTTGGGGCATACTACCTATATATTGGCA
GTTCGTTGATGCAATAGGCGCATTTGAAATTTTAGCCTTTCGTATTATATTTTCAGTAATATTCATGATTTTCATACTCG
CGGTTGGACAAAAACAACGCAATGCATTTCAACGAGATATGAATCAATTGTTAGACAGGCCCATTCAATTACTAGCAATT
GTCGTAGCAGGCTATGTCATTACATTAAATTGGGGTACATTTATTTGGGCTGTAACGAACGGACACGTCCTACAAACAAG
TTTAGGTTATTATATAAATCCACTTGTTAGCATTTTGCTCGCACTTATCTTTTTAAAAGAAAGATTCAATAAATTTGAAT
GGCTAGCCATTTTATTCGCATTCATCGGTGTATTATATATGACGCTCAAGATTGGAGAATTCCCAATCGTCTCTATTATA
TTAGCGTTATCCTTTGGTACATACGGATTATTGAAAAAAGTAGTACATATTGATGCCATCAGCAGTATTACGATTGAATG
TATTGTTACCGCACCTGCTGGACTAATATACGTAATTTATTTATGGCAGCAACATCAGATGTCATTTGGATTGAACATGT
CATCATTTTGGTTGTTATTTTCTGGTGCTATTACGGCAATACCACTAATCCTATTCTCAGCCGGGGCAAAACGTATTCCA
CTTTCACTAATAGGATTTATTCAATACGTTGGACCAACAATAATGTTTGTACTCGGCATATTTGTTTTCAAAGAGGCTTT
TAGTATAGATCAATTAATTACGTTTATATTTATTTGGACAGGTATTGTGTTATATAGTCTTTCTCAATACATTAAATTGA
AGAAACATCCAGTCGCAAAAACCCTATAA

Upstream 100 bases:

>100_bases
AATGATATCTTTATCGAAATATTATTAGTAAAATCGTTATATTAGCTTAACTAAGTGAGCGTAACATGTTAAAAATTTGG
GAGAGTAAGGAGGTATGTAA

Downstream 100 bases:

>100_bases
AATACGAGGAGAGATAATTATACGTGTTTTCAACTTCCTTTGTGTCATGTTAAGGTGAGACTGAGGTATGTGTGCAGTAA
CAGTGACAGCTGTATAAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MNTEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSVIFMIFILAVGQKQRNAFQRDMNQLLDRPIQLLAI
VVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILLALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSII
LALSFGTYGLLKKVVHIDAISSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
LSLIGFIQYVGPTIMFVLGIFVFKEAFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAKTL

Sequences:

>Translated_302_residues
MNTEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSVIFMIFILAVGQKQRNAFQRDMNQLLDRPIQLLAI
VVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILLALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSII
LALSFGTYGLLKKVVHIDAISSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
LSLIGFIQYVGPTIMFVLGIFVFKEAFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAKTL
>Mature_302_residues
MNTEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSVIFMIFILAVGQKQRNAFQRDMNQLLDRPIQLLAI
VVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILLALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSII
LALSFGTYGLLKKVVHIDAISSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
LSLIGFIQYVGPTIMFVLGIFVFKEAFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAKTL

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=287, Percent_Identity=37.2822299651568, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 34223; Mature: 34223

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSVIFMIFILAVGQKQR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
NAFQRDMNQLLDRPIQLLAIVVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILL
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEEEECCEEEEHHHHHHHHHHHHHHH
ALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSIILALSFGTYGLLKKVVHIDAI
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHH
SSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
HHHEEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
LSLIGFIQYVGPTIMFVLGIFVFKEAFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TL
CC
>Mature Secondary Structure
MNTEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSVIFMIFILAVGQKQR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
NAFQRDMNQLLDRPIQLLAIVVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILL
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEEEECCEEEEHHHHHHHHHHHHHHH
ALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSIILALSFGTYGLLKKVVHIDAI
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHH
SSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
HHHEEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
LSLIGFIQYVGPTIMFVLGIFVFKEAFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]