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The map label for this gene is cidB [H]

Identifier: 82752123

GI number: 82752123

Start: 2550453

End: 2551142

Strand: Reverse

Name: cidB [H]

Synonym: SAB2414c

Alternate gene names: 82752123

Gene position: 2551142-2550453 (Counterclockwise)

Preceding gene: 82752124

Following gene: 82752122

Centisome position: 93.02

GC content: 34.06

Gene sequence:

>690_bases
ATGAATGATTACGTGCAAGCCTTATTAATGATTTTGTTGACTGTCGTTTTATATTATTTCGCTAAAAGGTTACAACAAAA
ATATCCGAACCCATTTTTGAATCCAGCATTAATTGCATCTTTAGGAATTATTTTTGTCTTACTTATCTTTGGAATTAGTT
ATAACGGGTATATGAAAGGTGGCAGTTGGATCAACCATATTTTAAACGCAACGGTTGTATGTTTAGCGTACCCACTTTAT
AAAAATAGAGAGAAAATTAAAGACAATGTCTCTATCATTTTTGCAAGTGTATTAACTGGCGTCATGCTGAATTTCATGTT
AGTGTTCTTAACACTTAAAGCATTTGGCTATTCTAAAGACGTCATTGTAACGTTATTGCCTCGATCTATAACAGCAGCAG
TAGGTATCGAAGTGTCACATGAACTAGGTGGTACAGATACGATGACCGTATTTTTTATTATCACAACGGGTTTAATCGGT
AGTATTTTAGGTTCGATGTTATTACGATTTGGAAGATTTGAATCTTCTATCGCCAAAGGTTTAACGTATGGGAATGCGTC
ACATGCATTTGGCACAGCTAAAGCACTAGAAATGGATATTGAATCCGGTGCATTTAGTTCAATTGGGATGATTTTAACTG
CAGTTATTAGTTCAGTGTTAATACCTGTTCTGATCTTACTATTTTACTAA

Upstream 100 bases:

>100_bases
GCAGTCATTATCATAGGAACATGCATCGTTGCATTATCTTCAGGTTATATTGCTGAAAAAATGTCTGTTAAACATAAACA
TCGTAAAGGTGTAGACGCTT

Downstream 100 bases:

>100_bases
TTAGAAAAAGACACTAAGAAAGGGAGGCTATTAGTAATAATGGCAAAAATAAAAGCAAATGAAGCATTAGTTAAAGCATT
ACAAGCATGGGATATAGATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MNDYVQALLMILLTVVLYYFAKRLQQKYPNPFLNPALIASLGIIFVLLIFGISYNGYMKGGSWINHILNATVVCLAYPLY
KNREKIKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKDVIVTLLPRSITAAVGIEVSHELGGTDTMTVFFIITTGLIG
SILGSMLLRFGRFESSIAKGLTYGNASHAFGTAKALEMDIESGAFSSIGMILTAVISSVLIPVLILLFY

Sequences:

>Translated_229_residues
MNDYVQALLMILLTVVLYYFAKRLQQKYPNPFLNPALIASLGIIFVLLIFGISYNGYMKGGSWINHILNATVVCLAYPLY
KNREKIKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKDVIVTLLPRSITAAVGIEVSHELGGTDTMTVFFIITTGLIG
SILGSMLLRFGRFESSIAKGLTYGNASHAFGTAKALEMDIESGAFSSIGMILTAVISSVLIPVLILLFY
>Mature_229_residues
MNDYVQALLMILLTVVLYYFAKRLQQKYPNPFLNPALIASLGIIFVLLIFGISYNGYMKGGSWINHILNATVVCLAYPLY
KNREKIKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKDVIVTLLPRSITAAVGIEVSHELGGTDTMTVFFIITTGLIG
SILGSMLLRFGRFESSIAKGLTYGNASHAFGTAKALEMDIESGAFSSIGMILTAVISSVLIPVLILLFY

Specific function: Increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation. Inhibited by the antiholin-like proteins LrgAB. In an unstressed cell, the LrgAB products probably inhibit the function of the CidAB proteins.

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CidB/LrgB family. CidB subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=220, Percent_Identity=34.5454545454545, Blast_Score=144, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 25046; Mature: 25046

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDYVQALLMILLTVVLYYFAKRLQQKYPNPFLNPALIASLGIIFVLLIFGISYNGYMKG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
GSWINHILNATVVCLAYPLYKNREKIKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKD
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VIVTLLPRSITAAVGIEVSHELGGTDTMTVFFIITTGLIGSILGSMLLRFGRFESSIAKG
HHHHEHHHHHHHHHCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LTYGNASHAFGTAKALEMDIESGAFSSIGMILTAVISSVLIPVLILLFY
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNDYVQALLMILLTVVLYYFAKRLQQKYPNPFLNPALIASLGIIFVLLIFGISYNGYMKG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
GSWINHILNATVVCLAYPLYKNREKIKDNVSIIFASVLTGVMLNFMLVFLTLKAFGYSKD
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VIVTLLPRSITAAVGIEVSHELGGTDTMTVFFIITTGLIGSILGSMLLRFGRFESSIAKG
HHHHEHHHHHHHHHCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LTYGNASHAFGTAKALEMDIESGAFSSIGMILTAVISSVLIPVLILLFY
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA