Click here to switch to the map view.

The map label for this gene is yddR [H]

Identifier: 82752067

GI number: 82752067

Start: 2489356

End: 2490123

Strand: Reverse

Name: yddR [H]

Synonym: SAB2354c

Alternate gene names: 82752067

Gene position: 2490123-2489356 (Counterclockwise)

Preceding gene: 82752068

Following gene: 82752066

Centisome position: 90.8

GC content: 36.2

Gene sequence:

>768_bases
ATGAATATTAGACATATAAGAAATGCCACGGCCGTGATTGAATATGGAGGTAAACGCATTTTGATTGATCCAATGTTAAG
TGACAAAGGCGCATTTGAACCATTTCCAAATTCACCGAGACAAGATGAAAACAATCCACTTGTAGAACTACCATTAGCAA
TTGAAGATATCATTAACAACATCGATTTAGTAATTTTAACACATTTGCATATTGATCATTTTGATCCGAAAGCGATTGAA
GTATTGCCAAAAGATATTAAAATTTATACACAAAACGAAGCAGACGCTAGTGAAGTGGAGGGTTATGACTTTACAAACGT
TTCGGTATTTAATGATGTGACGCACATTGGAGAAATTGAGTTGATTAAAACAGATGCTCAACATGGTCATGGTGAAATCT
TGAAAATGACAGGACATGTTCACGGTTTAGTGCTGAAACATTCTGAAGATCCAACGTTATATTTAGCTGCTGATACGGTT
TGGTTCGACGGTGTTGAGAAGACTTTAAAAGCGCATCATCCAGATGTCGTAGTACTTAATGGTGGTGCAAATCAATTCTT
TGAAGGCGGGCCGTTAGTGATGGATGAACATGATGTATTGAAAATCGCTCATACATTGCCGCTTGCTCAAATAGTTGTTG
TACATATGGAAGTGGTCAATCATTGGCATTTATCTCGTGAAGAGCTGAATGAATTTATAAATTCTAACGACTTAGGTAAT
AGAGTTGTTGTACCAAATGACGGGGAATTATTAACCTTTGAAAAATAA

Upstream 100 bases:

>100_bases
TTGTTTTAAAATCGATATCCAGTGGAAAATAATTTGGCATGAAGTAGGCAATGTATGCATATTGTCGCAATGACAGACAT
ATGAAATAGGGGGATTTAAC

Downstream 100 bases:

>100_bases
ATGTTTGTTTATTTGATGAAGTGTATTGCTTAAAGCTAGTTTTAACGTATTTTACATTGAAGCTGGCTTTTTTGTTTGAT
AAAAATTTTCAAAAAGACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MNIRHIRNATAVIEYGGKRILIDPMLSDKGAFEPFPNSPRQDENNPLVELPLAIEDIINNIDLVILTHLHIDHFDPKAIE
VLPKDIKIYTQNEADASEVEGYDFTNVSVFNDVTHIGEIELIKTDAQHGHGEILKMTGHVHGLVLKHSEDPTLYLAADTV
WFDGVEKTLKAHHPDVVVLNGGANQFFEGGPLVMDEHDVLKIAHTLPLAQIVVVHMEVVNHWHLSREELNEFINSNDLGN
RVVVPNDGELLTFEK

Sequences:

>Translated_255_residues
MNIRHIRNATAVIEYGGKRILIDPMLSDKGAFEPFPNSPRQDENNPLVELPLAIEDIINNIDLVILTHLHIDHFDPKAIE
VLPKDIKIYTQNEADASEVEGYDFTNVSVFNDVTHIGEIELIKTDAQHGHGEILKMTGHVHGLVLKHSEDPTLYLAADTV
WFDGVEKTLKAHHPDVVVLNGGANQFFEGGPLVMDEHDVLKIAHTLPLAQIVVVHMEVVNHWHLSREELNEFINSNDLGN
RVVVPNDGELLTFEK
>Mature_255_residues
MNIRHIRNATAVIEYGGKRILIDPMLSDKGAFEPFPNSPRQDENNPLVELPLAIEDIINNIDLVILTHLHIDHFDPKAIE
VLPKDIKIYTQNEADASEVEGYDFTNVSVFNDVTHIGEIELIKTDAQHGHGEILKMTGHVHGLVLKHSEDPTLYLAADTV
WFDGVEKTLKAHHPDVVVLNGGANQFFEGGPLVMDEHDVLKIAHTLPLAQIVVVHMEVVNHWHLSREELNEFINSNDLGN
RVVVPNDGELLTFEK

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0173 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 28605; Mature: 28605

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRHIRNATAVIEYGGKRILIDPMLSDKGAFEPFPNSPRQDENNPLVELPLAIEDIINN
CCCCHHCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHCC
IDLVILTHLHIDHFDPKAIEVLPKDIKIYTQNEADASEVEGYDFTNVSVFNDVTHIGEIE
CEEEEEEEEEECCCCCHHEEECCCCEEEEECCCCCHHHCCCCCCCCEEHHHCHHCCCEEE
LIKTDAQHGHGEILKMTGHVHGLVLKHSEDPTLYLAADTVWFDGVEKTLKAHHPDVVVLN
EEEECCCCCCCEEEEEECCEEEEEEEECCCCEEEEEECEEEECCHHHHHHHCCCCEEEEE
GGANQFFEGGPLVMDEHDVLKIAHTLPLAQIVVVHMEVVNHWHLSREELNEFINSNDLGN
CCCCCCCCCCCEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC
RVVVPNDGELLTFEK
EEEECCCCCEEEECC
>Mature Secondary Structure
MNIRHIRNATAVIEYGGKRILIDPMLSDKGAFEPFPNSPRQDENNPLVELPLAIEDIINN
CCCCHHCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHCC
IDLVILTHLHIDHFDPKAIEVLPKDIKIYTQNEADASEVEGYDFTNVSVFNDVTHIGEIE
CEEEEEEEEEECCCCCHHEEECCCCEEEEECCCCCHHHCCCCCCCCEEHHHCHHCCCEEE
LIKTDAQHGHGEILKMTGHVHGLVLKHSEDPTLYLAADTVWFDGVEKTLKAHHPDVVVLN
EEEECCCCCCCEEEEEECCEEEEEEEECCCCEEEEEECEEEECCHHHHHHHCCCCEEEEE
GGANQFFEGGPLVMDEHDVLKIAHTLPLAQIVVVHMEVVNHWHLSREELNEFINSNDLGN
CCCCCCCCCCCEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC
RVVVPNDGELLTFEK
EEEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]