| Definition | Staphylococcus aureus RF122, complete genome. |
|---|---|
| Accession | NC_007622 |
| Length | 2,742,531 |
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The map label for this gene is opp1D
Identifier: 82752060
GI number: 82752060
Start: 2481356
End: 2482171
Strand: Reverse
Name: opp1D
Synonym: SAB2347c
Alternate gene names: 82752060
Gene position: 2482171-2481356 (Counterclockwise)
Preceding gene: 82752061
Following gene: 82752059
Centisome position: 90.51
GC content: 35.05
Gene sequence:
>816_bases ATGACATTGTTAACAGTTAAGCATTTGACGATTACAGATACCTGGACAGATCAACCACTCGTGAGTGATGTGAATTTTAC ATTAACTAAGGGTGAAACTTTAGGCGTTATTGGAGAAAGTGGTAGCGGTAAATCAATTACATGCAAATCGATTGTAGGTT TAAATCCAGAACGATTACGCGTAACAGGTGATATAACCTTTGATGGTAAGCCAATGTTGTCGTTATCGGAAGCACAATTG AAAAAATACCGTGGTAAAGATATTGCGATGGTCATGCAACAAGGTAGTCGTGCCTTTGACCCATCAACTACTGTCGGTAA ACAAATGTTTGAGACTATGAAAGTACATACGTCAATGTCTACACAAGAAATTGAAAAGACATTGATTGAATATATGGATT ATTTAAGTTTGAAAGATCCTAAACGTATATTAAAATCATACCCTTACATGTTATCAGGAGGAATGTTACAGCGATTGATG ATTGCTTTAGCGTTAGCTTTGAAACCAAAGTTAATCATTGCTGATGAGCCGACAACGGCTTTAGATACAATTACACAATA TGATGTACTGGAAGCATTTATAGATATTAAAAAACACTTTGACTGTGCGATGATTTTCATTTCACATGATTTAACGGTTA TTAACAAGATTGCAGACTGTGTTGTTGTGATGAAAAATGGTCAACTGATTGAGCATGGTACGCGTGAATCAGTCTTGCAT CATCCAGAACATGTTTATACGAAGTATTTATTATCAACTAAGAAGAAGATTAATGATCATTTTAAACATGTGATGAGGGG TGATGTACATGATTAA
Upstream 100 bases:
>100_bases TGGCATTTAACTTCTTATCCGATGCTTTACAAATTGCTATTGATCCTCGCATCTCTTCTAAAGATAAACTTCGTTCTGTG AAAAAAGGAGTGGTGCAATC
Downstream 100 bases:
>100_bases AATTAAAGATGTTGAAAAGTCATATCAAAGCGCACATGTTTTTAAGCGTCGTCGAACACCTATCGTGAAAGGTGTGTCAT TTGAGTGTCCAATCGGTGCG
Product: oligopeptide transporter ATPase subunit
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 271; Mature: 270
Protein sequence:
>271_residues MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIVGLNPERLRVTGDITFDGKPMLSLSEAQL KKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMSTQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLM IALALALKPKLIIADEPTTALDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADCVVVMKNGQLIEHGTRESVLH HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD
Sequences:
>Translated_271_residues MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIVGLNPERLRVTGDITFDGKPMLSLSEAQL KKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMSTQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLM IALALALKPKLIIADEPTTALDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADCVVVMKNGQLIEHGTRESVLH HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD >Mature_270_residues TLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIVGLNPERLRVTGDITFDGKPMLSLSEAQLK KYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMSTQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMI ALALALKPKLIIADEPTTALDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADCVVVMKNGQLIEHGTRESVLHH PEHVYTKYLLSTKKKINDHFKHVMRGDVHD
Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42741659, Length=235, Percent_Identity=30.2127659574468, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI42490749, Length=255, Percent_Identity=28.2352941176471, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI4505771, Length=233, Percent_Identity=29.6137339055794, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI9961252, Length=233, Percent_Identity=29.6137339055794, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI171184400, Length=248, Percent_Identity=27.0161290322581, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9961250, Length=235, Percent_Identity=29.7872340425532, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI156105685, Length=226, Percent_Identity=27.8761061946903, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI11967971, Length=225, Percent_Identity=24.8888888888889, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI48994883, Length=259, Percent_Identity=39.7683397683398, Blast_Score=205, Evalue=3e-54, Organism=Escherichia coli, GI1788506, Length=257, Percent_Identity=36.5758754863813, Blast_Score=188, Evalue=4e-49, Organism=Escherichia coli, GI145693107, Length=269, Percent_Identity=36.8029739776952, Blast_Score=186, Evalue=1e-48, Organism=Escherichia coli, GI1787759, Length=251, Percent_Identity=37.8486055776892, Blast_Score=186, Evalue=2e-48, Organism=Escherichia coli, GI1789963, Length=254, Percent_Identity=36.2204724409449, Blast_Score=184, Evalue=5e-48, Organism=Escherichia coli, GI1787548, Length=276, Percent_Identity=34.0579710144928, Blast_Score=168, Evalue=4e-43, Organism=Escherichia coli, GI1789890, Length=237, Percent_Identity=37.9746835443038, Blast_Score=167, Evalue=5e-43, Organism=Escherichia coli, GI1787500, Length=255, Percent_Identity=37.2549019607843, Blast_Score=157, Evalue=7e-40, Organism=Escherichia coli, GI1789962, Length=235, Percent_Identity=34.8936170212766, Blast_Score=152, Evalue=2e-38, Organism=Escherichia coli, GI1789891, Length=238, Percent_Identity=34.8739495798319, Blast_Score=140, Evalue=7e-35, Organism=Escherichia coli, GI48994997, Length=233, Percent_Identity=33.0472103004292, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1786398, Length=240, Percent_Identity=33.75, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787547, Length=276, Percent_Identity=30.4347826086957, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1789032, Length=229, Percent_Identity=32.3144104803493, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1787758, Length=239, Percent_Identity=30.5439330543933, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1788225, Length=253, Percent_Identity=29.2490118577075, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1788450, Length=267, Percent_Identity=26.5917602996255, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1789672, Length=247, Percent_Identity=27.9352226720648, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=29.8642533936652, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI87081791, Length=251, Percent_Identity=27.4900398406374, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87081709, Length=233, Percent_Identity=25.7510729613734, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1786703, Length=234, Percent_Identity=26.9230769230769, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1788761, Length=244, Percent_Identity=24.5901639344262, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI87081834, Length=207, Percent_Identity=27.536231884058, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1790467, Length=253, Percent_Identity=24.901185770751, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1790162, Length=229, Percent_Identity=27.9475982532751, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1787089, Length=232, Percent_Identity=27.5862068965517, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1789593, Length=250, Percent_Identity=28, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789586, Length=241, Percent_Identity=24.4813278008299, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787370, Length=237, Percent_Identity=24.8945147679325, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787143, Length=244, Percent_Identity=28.2786885245902, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789991, Length=269, Percent_Identity=30.1115241635688, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786654, Length=243, Percent_Identity=25.1028806584362, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786872, Length=215, Percent_Identity=28.3720930232558, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1790190, Length=227, Percent_Identity=27.7533039647577, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI87082267, Length=262, Percent_Identity=25.1908396946565, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI48994943, Length=247, Percent_Identity=26.7206477732794, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=27.6995305164319, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788165, Length=236, Percent_Identity=25, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1787182, Length=268, Percent_Identity=27.9850746268657, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI48995001, Length=224, Percent_Identity=26.7857142857143, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788897, Length=218, Percent_Identity=27.0642201834862, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1788644, Length=126, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1787712, Length=256, Percent_Identity=23.4375, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1787792, Length=213, Percent_Identity=29.1079812206573, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786698, Length=211, Percent_Identity=26.5402843601896, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787105, Length=209, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1788210, Length=227, Percent_Identity=25.9911894273128, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71992290, Length=244, Percent_Identity=31.5573770491803, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17558664, Length=230, Percent_Identity=32.6086956521739, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17541710, Length=241, Percent_Identity=30.2904564315353, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI212646699, Length=265, Percent_Identity=24.5283018867925, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI115535101, Length=235, Percent_Identity=28.936170212766, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17567269, Length=241, Percent_Identity=27.8008298755187, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17567265, Length=230, Percent_Identity=29.1304347826087, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI193208177, Length=251, Percent_Identity=25.8964143426295, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17569145, Length=230, Percent_Identity=28.695652173913, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193209708, Length=237, Percent_Identity=27.0042194092827, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193202349, Length=252, Percent_Identity=28.968253968254, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17551700, Length=237, Percent_Identity=29.535864978903, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17565938, Length=252, Percent_Identity=25.3968253968254, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17551702, Length=237, Percent_Identity=29.535864978903, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=256, Percent_Identity=27.734375, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6324985, Length=235, Percent_Identity=26.3829787234043, Blast_Score=68, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6322640, Length=237, Percent_Identity=27.4261603375527, Blast_Score=62, Evalue=8e-11, Organism=Drosophila melanogaster, GI281363262, Length=230, Percent_Identity=30.8695652173913, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24653245, Length=230, Percent_Identity=30.8695652173913, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI85726357, Length=255, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI21357907, Length=237, Percent_Identity=25.7383966244726, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24650853, Length=214, Percent_Identity=28.0373831775701, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI281362751, Length=214, Percent_Identity=28.0373831775701, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24650855, Length=214, Percent_Identity=28.0373831775701, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24581383, Length=230, Percent_Identity=25.6521739130435, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24581385, Length=230, Percent_Identity=25.6521739130435, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24582014, Length=252, Percent_Identity=23.015873015873, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24582012, Length=252, Percent_Identity=23.015873015873, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581387, Length=234, Percent_Identity=25.2136752136752, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24666092, Length=220, Percent_Identity=23.6363636363636, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 30505; Mature: 30374
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIVGLNPERLR CEEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEHHHHCCCCCCEE VTGDITFDGKPMLSLSEAQLKKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMS EEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC TQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMIALALALKPKLIIADEPTTA HHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCEEEEECCCCHH LDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADCVVVMKNGQLIEHGTRESVLH HHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHEEEEECCEEEECCCHHHHHH HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIVGLNPERLR EEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEHHHHCCCCCCEE VTGDITFDGKPMLSLSEAQLKKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMS EEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC TQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMIALALALKPKLIIADEPTTA HHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCEEEEECCCCHH LDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADCVVVMKNGQLIEHGTRESVLH HHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHEEEEECCEEEECCCHHHHHH HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]