Click here to switch to the map view.

The map label for this gene is ysdC [H]

Identifier: 82752051

GI number: 82752051

Start: 2473728

End: 2474804

Strand: Reverse

Name: ysdC [H]

Synonym: SAB2338c

Alternate gene names: 82752051

Gene position: 2474804-2473728 (Counterclockwise)

Preceding gene: 82752052

Following gene: 82752050

Centisome position: 90.24

GC content: 37.51

Gene sequence:

>1077_bases
ATGAATCAGTTAGTCAAATTACTTAAACATTTAACAGATGTAAACGGCATTGCTGGTTATGAAATGCAAGTTAAAGAAGC
AATGCGTAGCTATATAGAGCCTGTCAGTGATCAAATTATTGAAGATAATTTGGGTGGTATTTTTGGAAAGAAAAATGCTG
AGAATGGTCAATACTCAATTATGATTTCTGGTCATATGGATGAAGTTGGTTTTATGGTAACAAAGATTGATAAACATGGT
TTTATTTCATTTACGCCAGTTGGTGGATGGTGGAATCAAGTCATGCTATCTCAAAAAGTAACGATTACAACAGATTCGGG
CAAAGAAATTAGAGGTATCATCGGTTCTAAACCGCCACATGTCTTAACGCCTGAAGAACGTAAAAAGCCAATGGAAATCA
AAAATATGTTTATAGATATTGGTGTTAGTAGCAAGGAAGAAGCTGAAAAAGCTGGCGTTGAAGTAGGCAATATGGTTACG
CCATATAGTGAATTTGAAGTGCTTGCAAATGATAAATATTTAACTGCGAAAGCATTTGATAATCGCTATGGCTGTGCATT
AGCTGTTGAGGTATTAAAACGTTTAAAAGATGAAAATATTGGCATTAACTTATACAGTGGTGCCACAGTGCAAGAAGAAG
TTGGTTTGCGTGGTGCGAAAGTGGCAGCGAATACAATTAAACCAGATTTGGCGATAGCCGTCGATGTGGGTATTGCTTAT
GATACACCAGGTATGTCAGGTCAAACGAGTGATAGTAAACTAGGCGGTGGTCCAGTTGTTATTATGATGGATGCTACAAG
TATTGCGCACCAAGGTTTGCGCAAGCATATTAAAGATGTAGCTAACAGACATAACATCGAAGTACAATGGGATACGACAC
CAGGTGGAGGTACAGATGCGGGAAGTATTCATGTCGCAAATGAAGGTATTCCAACGATGACAATAGGTGTCACGTTACGA
TACATGCACTCTAATGTATCGGTACTCAATGTGGATGATTATGAAAATTCTATCCGTCTTGTTACTGAAATTGTCCGTTC
ATTGAATGATGAAACTTATAAAAATATCATGTGGTAG

Upstream 100 bases:

>100_bases
TAAAAATATTTAAGCATGAAAACGATAAAGCGGTAGGGAACGTTTTTCTGAAAGTTAGTGATACAATAGTTTTAAGTTGA
AATACAGGAGGATGAATAAC

Downstream 100 bases:

>100_bases
TCAAATCCATAAATAATAAAGAAAGTCTTTAATATGATGTCATGCAAGAACTAAGTTAGATGCTTAGTTAGCATGAGATA
TCATGTTAAAGGCTTTTTAT

Product: endo-1,4-beta-glucanase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MNQLVKLLKHLTDVNGIAGYEMQVKEAMRSYIEPVSDQIIEDNLGGIFGKKNAENGQYSIMISGHMDEVGFMVTKIDKHG
FISFTPVGGWWNQVMLSQKVTITTDSGKEIRGIIGSKPPHVLTPEERKKPMEIKNMFIDIGVSSKEEAEKAGVEVGNMVT
PYSEFEVLANDKYLTAKAFDNRYGCALAVEVLKRLKDENIGINLYSGATVQEEVGLRGAKVAANTIKPDLAIAVDVGIAY
DTPGMSGQTSDSKLGGGPVVIMMDATSIAHQGLRKHIKDVANRHNIEVQWDTTPGGGTDAGSIHVANEGIPTMTIGVTLR
YMHSNVSVLNVDDYENSIRLVTEIVRSLNDETYKNIMW

Sequences:

>Translated_358_residues
MNQLVKLLKHLTDVNGIAGYEMQVKEAMRSYIEPVSDQIIEDNLGGIFGKKNAENGQYSIMISGHMDEVGFMVTKIDKHG
FISFTPVGGWWNQVMLSQKVTITTDSGKEIRGIIGSKPPHVLTPEERKKPMEIKNMFIDIGVSSKEEAEKAGVEVGNMVT
PYSEFEVLANDKYLTAKAFDNRYGCALAVEVLKRLKDENIGINLYSGATVQEEVGLRGAKVAANTIKPDLAIAVDVGIAY
DTPGMSGQTSDSKLGGGPVVIMMDATSIAHQGLRKHIKDVANRHNIEVQWDTTPGGGTDAGSIHVANEGIPTMTIGVTLR
YMHSNVSVLNVDDYENSIRLVTEIVRSLNDETYKNIMW
>Mature_358_residues
MNQLVKLLKHLTDVNGIAGYEMQVKEAMRSYIEPVSDQIIEDNLGGIFGKKNAENGQYSIMISGHMDEVGFMVTKIDKHG
FISFTPVGGWWNQVMLSQKVTITTDSGKEIRGIIGSKPPHVLTPEERKKPMEIKNMFIDIGVSSKEEAEKAGVEVGNMVT
PYSEFEVLANDKYLTAKAFDNRYGCALAVEVLKRLKDENIGINLYSGATVQEEVGLRGAKVAANTIKPDLAIAVDVGIAY
DTPGMSGQTSDSKLGGGPVVIMMDATSIAHQGLRKHIKDVANRHNIEVQWDTTPGGGTDAGSIHVANEGIPTMTIGVTLR
YMHSNVSVLNVDDYENSIRLVTEIVRSLNDETYKNIMW

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=347, Percent_Identity=39.4812680115274, Blast_Score=273, Evalue=9e-75,
Organism=Escherichia coli, GI87082417, Length=349, Percent_Identity=33.5243553008596, Blast_Score=187, Evalue=8e-49,
Organism=Escherichia coli, GI1788727, Length=351, Percent_Identity=30.7692307692308, Blast_Score=179, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 39204; Mature: 39204

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQLVKLLKHLTDVNGIAGYEMQVKEAMRSYIEPVSDQIIEDNLGGIFGKKNAENGQYSI
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
MISGHMDEVGFMVTKIDKHGFISFTPVGGWWNQVMLSQKVTITTDSGKEIRGIIGSKPPH
EEECCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHCCEEEEEECCCCHHHHHCCCCCCC
VLTPEERKKPMEIKNMFIDIGVSSKEEAEKAGVEVGNMVTPYSEFEVLANDKYLTAKAFD
CCCCHHHCCCCEEEEEEEEECCCCHHHHHHCCCCCCCCCCCHHHHEEEECCCEEEEEECC
NRYGCALAVEVLKRLKDENIGINLYSGATVQEEVGLRGAKVAANTIKPDLAIAVDVGIAY
CCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHCCCCCEEECCCCCCCEEEEEEEEEEE
DTPGMSGQTSDSKLGGGPVVIMMDATSIAHQGLRKHIKDVANRHNIEVQWDTTPGGGTDA
CCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
GSIHVANEGIPTMTIGVTLRYMHSNVSVLNVDDYENSIRLVTEIVRSLNDETYKNIMW
CEEEEECCCCCEEEEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHCCC
>Mature Secondary Structure
MNQLVKLLKHLTDVNGIAGYEMQVKEAMRSYIEPVSDQIIEDNLGGIFGKKNAENGQYSI
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
MISGHMDEVGFMVTKIDKHGFISFTPVGGWWNQVMLSQKVTITTDSGKEIRGIIGSKPPH
EEECCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHCCEEEEEECCCCHHHHHCCCCCCC
VLTPEERKKPMEIKNMFIDIGVSSKEEAEKAGVEVGNMVTPYSEFEVLANDKYLTAKAFD
CCCCHHHCCCCEEEEEEEEECCCCHHHHHHCCCCCCCCCCCHHHHEEEECCCEEEEEECC
NRYGCALAVEVLKRLKDENIGINLYSGATVQEEVGLRGAKVAANTIKPDLAIAVDVGIAY
CCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHCCCCCEEECCCCCCCEEEEEEEEEEE
DTPGMSGQTSDSKLGGGPVVIMMDATSIAHQGLRKHIKDVANRHNIEVQWDTTPGGGTDA
CCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
GSIHVANEGIPTMTIGVTLRYMHSNVSVLNVDDYENSIRLVTEIVRSLNDETYKNIMW
CEEEEECCCCCEEEEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]