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The map label for this gene is 82751958

Identifier: 82751958

GI number: 82751958

Start: 2371890

End: 2372333

Strand: Direct

Name: 82751958

Synonym: SAB2242

Alternate gene names: NA

Gene position: 2371890-2372333 (Clockwise)

Preceding gene: 82751957

Following gene: 82751959

Centisome position: 86.49

GC content: 28.15

Gene sequence:

>444_bases
ATGATGAAACTCAATTTATTTATCAATGCAAATGAGACGGAATCTTATATTGATATACATGCACCTAAAATGAATGATCA
CGTTCAAAGTATTATTAATGCAGTCAATGATTTAGACAAATCACATACATTAGTCGGATACATAGACAAAGAAATCCATA
TCATTCATATATCAGATGTTATAACATTCCAAGTTATTAATAAAAATGTAACAGCCATTACAAGAAATCAAAAATTCAAA
CTAAAATTACGACTTTATGAACTAGAAAAACAATTACCACAACATTTCATTCGCATTTCCAAATCAGAAATCGTCAACAA
GTATTGCATTGAAAAATTATTATTAGAGCCAAATGGACTTATACGTATGTATCTTAAAGATGCACACTACACCTATTCTT
CTAGACGTTATTTAAAATCTATAAAGGAGCGCTTATCAATATGA

Upstream 100 bases:

>100_bases
CGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACACATTTTAAATATATCGATGGTCGTTTATGGTTTAATAAT
TTTGAAGGAGGCATTAACCT

Downstream 100 bases:

>100_bases
AAAATTTGAAAAACTCATTATTCATTAGCTTAATCATTGGTTTGACCCTTTCACTGTTCTTTAGTATGTTATTTGCAGAC
GGCAAATATTATCCACTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MMKLNLFINANETESYIDIHAPKMNDHVQSIINAVNDLDKSHTLVGYIDKEIHIIHISDVITFQVINKNVTAITRNQKFK
LKLRLYELEKQLPQHFIRISKSEIVNKYCIEKLLLEPNGLIRMYLKDAHYTYSSRRYLKSIKERLSI

Sequences:

>Translated_147_residues
MMKLNLFINANETESYIDIHAPKMNDHVQSIINAVNDLDKSHTLVGYIDKEIHIIHISDVITFQVINKNVTAITRNQKFK
LKLRLYELEKQLPQHFIRISKSEIVNKYCIEKLLLEPNGLIRMYLKDAHYTYSSRRYLKSIKERLSI
>Mature_147_residues
MMKLNLFINANETESYIDIHAPKMNDHVQSIINAVNDLDKSHTLVGYIDKEIHIIHISDVITFQVINKNVTAITRNQKFK
LKLRLYELEKQLPQHFIRISKSEIVNKYCIEKLLLEPNGLIRMYLKDAHYTYSSRRYLKSIKERLSI

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH LytTR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007492 [H]

Pfam domain/function: PF04397 LytTR [H]

EC number: NA

Molecular weight: Translated: 17386; Mature: 17386

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKLNLFINANETESYIDIHAPKMNDHVQSIINAVNDLDKSHTLVGYIDKEIHIIHISDV
CEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCEEEEEEECCE
ITFQVINKNVTAITRNQKFKLKLRLYELEKQLPQHFIRISKSEIVNKYCIEKLLLEPNGL
EEEEEECCCEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
IRMYLKDAHYTYSSRRYLKSIKERLSI
EEEEEECCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMKLNLFINANETESYIDIHAPKMNDHVQSIINAVNDLDKSHTLVGYIDKEIHIIHISDV
CEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCEEEEEEECCE
ITFQVINKNVTAITRNQKFKLKLRLYELEKQLPQHFIRISKSEIVNKYCIEKLLLEPNGL
EEEEEECCCEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
IRMYLKDAHYTYSSRRYLKSIKERLSI
EEEEEECCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]