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The map label for this gene is rpoA

Identifier: 82751814

GI number: 82751814

Start: 2245079

End: 2246023

Strand: Reverse

Name: rpoA

Synonym: SAB2097c

Alternate gene names: 82751814

Gene position: 2246023-2245079 (Counterclockwise)

Preceding gene: 82751815

Following gene: 82751813

Centisome position: 81.9

GC content: 33.76

Gene sequence:

>945_bases
ATGATAGAAATCGAAAAACCTAGAATTGAGACAATTGAAATTAGTGAAGATGCTAAATTCGGTAAGTTCGTTGTTGAACC
ACTAGAACGTGGCTACGGTACTACACTAGGAAACTCCTTACGTCGTATCCTACTATCTTCATTATCAGGTGCAGCCGTTA
AGTATATTGAAATTGAGGGAGTTTTACATGAATTCTCAGCAGTAGACAATGTAGTTGAAGATGTTTCTACAATTATTATG
AACATTAAACAATTAGCATTGAAAATTTACTCTGAAGAAGATAAAACTTTAGAAATTGATGTACGTGATGAAGGCGAAGT
AACAGCAAGCGACATTACACATGATAGTGATGTTGAAATTTTAAACCCAGAGCTTAAAATTGCAACAGTATCTAAAGGTG
GTCACTTAAAAATTCGTCTAGTTGCTAACAAGGGTAGAGGTTACGCATTAGCAGAACAAAATAATACTAGTGATTTACCA
ATTGGTGTAATCCCTGTTGATTCATTGTATTCACCTGTTGAACGTGTGAACTATACTGTTGAAAATACACGTGTAGGTCA
AAGCAGTGATTTTGATAAATTAACATTGGATGTTTGGACTAATGGTTCAATCACACCACAAGAATCAGTTTCATTAGCAG
CAAAAATAATGACTGAACACTTGAATATCTTCGTTGGTCTTACTGATGAAGCGCAAAACGCTGAAATCATGATTGAAAAA
GAAGAAGATCAAAAAGAAAAAGTATTGGAAATGTCTATTGAAGAATTAGACTTATCTGTACGTTCATATAACTGCTTAAA
ACGCGCAGGAATCAATTCTGTTCAAGAGTTAGCTGACAAATCTGAAGCTGACATGATGAAAGTGCGTAATTTAGGTCGTA
AATCTTTAGAAGAAGTTAAATACAAATTAGAAGATTTAGGATTAGGATTAAGAAAAGAAGATTGA

Upstream 100 bases:

>100_bases
GTCCACCAAAACGTCGTCGTGTATAATTTATGATGGTATTGTTACAGGTCACTGAGCAAACATTTTAAATTAAGTCGACG
TATATAAGGAGGATATTTAA

Downstream 100 bases:

>100_bases
TAAAGGAGGTTAACTCATGGGTTACAGAAAATTAGGTCGTACTTCTGATCAACGTAAAGCTATGTTACGTGACTTAGCTA
CATCACTTATTATTAGTGAA

Product: DNA-directed RNA polymerase subunit alpha

Products: NA

Alternate protein names: RNAP subunit alpha; RNA polymerase subunit alpha; Transcriptase subunit alpha

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLSGAAVKYIEIEGVLHEFSAVDNVVEDVSTIIM
NIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEILNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLP
IGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEK
EEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED

Sequences:

>Translated_314_residues
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLSGAAVKYIEIEGVLHEFSAVDNVVEDVSTIIM
NIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEILNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLP
IGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEK
EEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED
>Mature_314_residues
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLSGAAVKYIEIEGVLHEFSAVDNVVEDVSTIIM
NIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEILNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLP
IGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEK
EEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG0202

COG function: function code K; DNA-directed RNA polymerase, alpha subunit/40 kD subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase alpha chain family

Homologues:

Organism=Escherichia coli, GI1789690, Length=318, Percent_Identity=41.8238993710692, Blast_Score=239, Evalue=2e-64,

Paralogues:

None

Copy number: 850 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 560 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 6847 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 7,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): RPOA_STAAB (Q2YYM2)

Other databases:

- EMBL:   AJ938182
- RefSeq:   YP_417555.1
- HSSP:   P20429
- ProteinModelPortal:   Q2YYM2
- STRING:   Q2YYM2
- EnsemblBacteria:   EBSTAT00000012713
- GeneID:   3792927
- GenomeReviews:   AJ938182_GR
- KEGG:   sab:SAB2097c
- NMPDR:   fig|273036.3.peg.2052
- eggNOG:   COG0202
- GeneTree:   EBGT00050000024844
- HOGENOM:   HBG430844
- OMA:   FGTTLGN
- ProtClustDB:   PRK05182
- BioCyc:   SAUR273036:SAB2097C-MONOMER
- HAMAP:   MF_00059
- InterPro:   IPR011261
- InterPro:   IPR011262
- InterPro:   IPR009025
- InterPro:   IPR011263
- InterPro:   IPR011260
- InterPro:   IPR011773
- ProDom:   PD001179
- SMART:   SM00662
- TIGRFAMs:   TIGR02027

Pfam domain/function: PF01000 RNA_pol_A_bac; PF03118 RNA_pol_A_CTD; PF01193 RNA_pol_L; SSF47789 RNAP_alpha_C; SSF56553 RNAP_insert; SSF55257 RNAP_RBP11-like

EC number: =2.7.7.6

Molecular weight: Translated: 35002; Mature: 35002

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLSGAAVKYIEIEG
CCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEHH
VLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCCCCCCCCEE
LNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTV
ECCCEEEEEECCCCEEEEEEEEECCCCEEEECCCCCCCCEEEEEEHHHHHCHHHHCEEEE
ENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEK
ECCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCEEEEEC
EEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHH
YKLEDLGLGLRKED
HHHHHHCCCCCCCC
>Mature Secondary Structure
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLSGAAVKYIEIEG
CCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEHH
VLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCCCCCCCCEE
LNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTV
ECCCEEEEEECCCCEEEEEEEEECCCCEEEECCCCCCCCEEEEEEHHHHHCHHHHCEEEE
ENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEK
ECCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCEEEEEC
EEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHH
YKLEDLGLGLRKED
HHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA