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The map label for this gene is ydcI [H]

Identifier: 82751666

GI number: 82751666

Start: 2081290

End: 2083440

Strand: Reverse

Name: ydcI [H]

Synonym: SAB1948c

Alternate gene names: 82751666

Gene position: 2083440-2081290 (Counterclockwise)

Preceding gene: 82751667

Following gene: 82751665

Centisome position: 75.97

GC content: 33.38

Gene sequence:

>2151_bases
ATGGACAATCAATTGATTAATTCAATCATAGAGAAATATCAATTTAGTAAAAAACAAATTGAAGCAGTGTTAACACTGCT
TGAAGAAAAAAATACAGTACCATTTATTGCGAGGTATCGAAAAGAGCAAACTGGTGGACTAGATGAGGTTCAAATAAAGC
AAATTGATGACGAATACCAATATATGGTCAATTTACAAAAACGTAAAGAAGAAGTTATCAAAAATATAGAACAGCAAGGA
TTACTTACTGAGGAATTAAAGAAAGATATTTTAAAACAGAACAAATTACAACGTGTTGAAGACCTATATAGACCTTTTAA
ACAAAAGAAAAAGACTAGGGCAACTGAGGCGAAACGTAAAGGATTAGAACCATTAGCGATATGGATGAAGGCACGTAAAC
ATGAAGTCTCAATTGAAGAAAAAGCACAACAATTTATAAATGAAGAAGTGCAATCGGTTGAAGATGCTATCAAAGGTGCG
CAAGATATTATTGCGGAACAAATTTCAGATAATCCTAAATATAGAACAAAAATTTTAAAAGATATGTATCATCAAGGTGT
GTTAACTACATCTAAAAAGAAAAATGCTGAAGATGAAAAAGGTATTTTTGAAATGTACTATGAATACAGTGAGCCAATTA
AACGCATTGCTAATCATAGAGTTTTAGCTGTGAATCGTGGCGAAAAAGAGAAAGTATTATCTGTAAAGTTTGAATTCGAT
ACGACATCAGTAGAGGATTTCATTGCACGTCAAGAAATCAATCATAATAATGTAAATCGCAGTTATATTTTAGAGGCGAT
TAAAGATAGCTTGAAACGCTTAATTGTCCCTTCGATAGAGCGTGAAATCCATGCTGATTTAACTGAAAAAGCTGAAAATC
ATGCAATAGATGTTTTTAGTGAAAACTTAAGAAATCTATTACTGCAACCTCCAATGAAAGGTAAACAAATATTAGGCGTA
GATCCTGCATTTAGAACAGGTTGTAAATTAGCAGCCATTAACCCATTTGGTACTTTTATAGCAAAAGGTGTGATTTATCC
GCATCCATCAGTTTCTAAAAAAGAAGCAGCAGAGAAGGATTTTGTACAAATGGTTAAAGCGTATGATGTGCAATTAATTG
CAATTGGCAATGGTACAGCAAGTCGTGAAACAGAACAATTTGTTGCAGATTTAATTAAAAAGCATCAGTTGCCAGTACAA
TTCATCATTGTCAATGAAGCGGGTGCTTCAGTATACTCAGCATCAGAAATTGCTAGAGATGAATTTCCTGATTTTCAAGT
GGAAGAAAGAAGTGCCGTATCAATTGGACGACGCGTTCAAGATCCATTAAGTGAATTAGTTAAAATCGATCCTAAATCTA
TTGGTGTTGGACAATACCAGCATGATGTTAATCAAAAAGCACTAGAAAATGCATTAACTTTCGTTGTTGAAACAGCAGTT
AACCAAGTAGGTGTTGATATCAATACAGCATCATCATCATTATTACAATATGTGTCTGGTCTAAGTTCGCAAATTGCTAA
AAATATAATTGCATATAGAGAAGAAAATGGCGCAATAAAGCATAATAAAGAGTTAAGTAAGATTAAGCGTTTGGGTGCTA
AAACTTTTGAGCAGAGTATAGGATTTTTAAGAATAGTAGACGGGTCAGAGCCATTGGATAATACATCGATTCATCCCGAA
AGCTATAAAGTAACGTATAAGTTATTAGATAAACTCGGATTTGGTGGCAATGATTTAGGTAGTGATGCATTAAAAGCTAA
ATTAAATTCATTGGATATGGATGAACTGGCGATTGAATTACAAGTAGGTGTACCTACATTAGAGGATATTATTAAATCCT
TGAAAGCACCTAATCGAGATCCAAGGGACGAGTTTGAAACACCAATCCTTAAATCCGATGTGCTATCAATTGAAGATTTA
AAAGAAGGAATGAAATTGAGTGGCACAGTTAGAAATGTAGTAGATTTTGGAGCATTTGTAGATATAGGTGTTAAACAAGA
TGGCCTTGTCCATGTTTCGACACTTTCTAAGAAGTTCGTAAAAAATCCAATGGATATTGTCAGTGTCGGTGATATCGTTG
ACGTTTGGATTTACAGTATTGACAAAAATAAAGACAAAGTATCGTTAACGATGATTGATCCACATGAATAA

Upstream 100 bases:

>100_bases
TTGGAAGTTAAAATTGCATTAAGTATCATACCTTAATAGAAGTACTATAGAATATGTTAAAATAAATGAGTAAATTTAAG
AAAAAGTGTGGGTTAAGTAA

Downstream 100 bases:

>100_bases
TGACAAACTTCAGCGAATGGTTGAGAACCTTTCGGAAGAAAAATTTGGACGTACGTTTCGACATTGTGCATATTTTAATA
AAAGGTTACGTACAACAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 716; Mature: 716

Protein sequence:

>716_residues
MDNQLINSIIEKYQFSKKQIEAVLTLLEEKNTVPFIARYRKEQTGGLDEVQIKQIDDEYQYMVNLQKRKEEVIKNIEQQG
LLTEELKKDILKQNKLQRVEDLYRPFKQKKKTRATEAKRKGLEPLAIWMKARKHEVSIEEKAQQFINEEVQSVEDAIKGA
QDIIAEQISDNPKYRTKILKDMYHQGVLTTSKKKNAEDEKGIFEMYYEYSEPIKRIANHRVLAVNRGEKEKVLSVKFEFD
TTSVEDFIARQEINHNNVNRSYILEAIKDSLKRLIVPSIEREIHADLTEKAENHAIDVFSENLRNLLLQPPMKGKQILGV
DPAFRTGCKLAAINPFGTFIAKGVIYPHPSVSKKEAAEKDFVQMVKAYDVQLIAIGNGTASRETEQFVADLIKKHQLPVQ
FIIVNEAGASVYSASEIARDEFPDFQVEERSAVSIGRRVQDPLSELVKIDPKSIGVGQYQHDVNQKALENALTFVVETAV
NQVGVDINTASSSLLQYVSGLSSQIAKNIIAYREENGAIKHNKELSKIKRLGAKTFEQSIGFLRIVDGSEPLDNTSIHPE
SYKVTYKLLDKLGFGGNDLGSDALKAKLNSLDMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDL
KEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSTLSKKFVKNPMDIVSVGDIVDVWIYSIDKNKDKVSLTMIDPHE

Sequences:

>Translated_716_residues
MDNQLINSIIEKYQFSKKQIEAVLTLLEEKNTVPFIARYRKEQTGGLDEVQIKQIDDEYQYMVNLQKRKEEVIKNIEQQG
LLTEELKKDILKQNKLQRVEDLYRPFKQKKKTRATEAKRKGLEPLAIWMKARKHEVSIEEKAQQFINEEVQSVEDAIKGA
QDIIAEQISDNPKYRTKILKDMYHQGVLTTSKKKNAEDEKGIFEMYYEYSEPIKRIANHRVLAVNRGEKEKVLSVKFEFD
TTSVEDFIARQEINHNNVNRSYILEAIKDSLKRLIVPSIEREIHADLTEKAENHAIDVFSENLRNLLLQPPMKGKQILGV
DPAFRTGCKLAAINPFGTFIAKGVIYPHPSVSKKEAAEKDFVQMVKAYDVQLIAIGNGTASRETEQFVADLIKKHQLPVQ
FIIVNEAGASVYSASEIARDEFPDFQVEERSAVSIGRRVQDPLSELVKIDPKSIGVGQYQHDVNQKALENALTFVVETAV
NQVGVDINTASSSLLQYVSGLSSQIAKNIIAYREENGAIKHNKELSKIKRLGAKTFEQSIGFLRIVDGSEPLDNTSIHPE
SYKVTYKLLDKLGFGGNDLGSDALKAKLNSLDMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDL
KEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSTLSKKFVKNPMDIVSVGDIVDVWIYSIDKNKDKVSLTMIDPHE
>Mature_716_residues
MDNQLINSIIEKYQFSKKQIEAVLTLLEEKNTVPFIARYRKEQTGGLDEVQIKQIDDEYQYMVNLQKRKEEVIKNIEQQG
LLTEELKKDILKQNKLQRVEDLYRPFKQKKKTRATEAKRKGLEPLAIWMKARKHEVSIEEKAQQFINEEVQSVEDAIKGA
QDIIAEQISDNPKYRTKILKDMYHQGVLTTSKKKNAEDEKGIFEMYYEYSEPIKRIANHRVLAVNRGEKEKVLSVKFEFD
TTSVEDFIARQEINHNNVNRSYILEAIKDSLKRLIVPSIEREIHADLTEKAENHAIDVFSENLRNLLLQPPMKGKQILGV
DPAFRTGCKLAAINPFGTFIAKGVIYPHPSVSKKEAAEKDFVQMVKAYDVQLIAIGNGTASRETEQFVADLIKKHQLPVQ
FIIVNEAGASVYSASEIARDEFPDFQVEERSAVSIGRRVQDPLSELVKIDPKSIGVGQYQHDVNQKALENALTFVVETAV
NQVGVDINTASSSLLQYVSGLSSQIAKNIIAYREENGAIKHNKELSKIKRLGAKTFEQSIGFLRIVDGSEPLDNTSIHPE
SYKVTYKLLDKLGFGGNDLGSDALKAKLNSLDMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDL
KEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSTLSKKFVKNPMDIVSVGDIVDVWIYSIDKNKDKVSLTMIDPHE

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=792, Percent_Identity=34.0909090909091, Blast_Score=413, Evalue=1e-115,
Organism=Homo sapiens, GI27597090, Length=582, Percent_Identity=23.8831615120275, Blast_Score=116, Evalue=9e-26,
Organism=Escherichia coli, GI87082262, Length=724, Percent_Identity=41.2983425414365, Blast_Score=550, Evalue=1e-158,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=44, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=759, Percent_Identity=30.4347826086957, Blast_Score=269, Evalue=5e-72,
Organism=Caenorhabditis elegans, GI17552892, Length=335, Percent_Identity=28.6567164179104, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI62484314, Length=741, Percent_Identity=34.412955465587, Blast_Score=403, Evalue=1e-112,
Organism=Drosophila melanogaster, GI24640080, Length=584, Percent_Identity=22.0890410958904, Blast_Score=101, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 80943; Mature: 80943

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNQLINSIIEKYQFSKKQIEAVLTLLEEKNTVPFIARYRKEQTGGLDEVQIKQIDDEYQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCHHHH
YMVNLQKRKEEVIKNIEQQGLLTEELKKDILKQNKLQRVEDLYRPFKQKKKTRATEAKRK
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLEPLAIWMKARKHEVSIEEKAQQFINEEVQSVEDAIKGAQDIIAEQISDNPKYRTKILK
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DMYHQGVLTTSKKKNAEDEKGIFEMYYEYSEPIKRIANHRVLAVNRGEKEKVLSVKFEFD
HHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEEEECC
TTSVEDFIARQEINHNNVNRSYILEAIKDSLKRLIVPSIEREIHADLTEKAENHAIDVFS
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENLRNLLLQPPMKGKQILGVDPAFRTGCKLAAINPFGTFIAKGVIYPHPSVSKKEAAEKD
HHHHHHHCCCCCCCCEEECCCHHHHCCCCEEEECHHHHHHHCCCCCCCCCCCHHHHHHHH
FVQMVKAYDVQLIAIGNGTASRETEQFVADLIKKHQLPVQFIIVNEAGASVYSASEIARD
HHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
EFPDFQVEERSAVSIGRRVQDPLSELVKIDPKSIGVGQYQHDVNQKALENALTFVVETAV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NQVGVDINTASSSLLQYVSGLSSQIAKNIIAYREENGAIKHNKELSKIKRLGAKTFEQSI
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
GFLRIVDGSEPLDNTSIHPESYKVTYKLLDKLGFGGNDLGSDALKAKLNSLDMDELAIEL
CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHEEEE
QVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLKEGMKLSGTVRNVVDFGAFV
EECCCHHHHHHHHHCCCCCCCCHHHCCCCHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHE
DIGVKQDGLVHVSTLSKKFVKNPMDIVSVGDIVDVWIYSIDKNKDKVSLTMIDPHE
EECCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCEEEEEEECCCC
>Mature Secondary Structure
MDNQLINSIIEKYQFSKKQIEAVLTLLEEKNTVPFIARYRKEQTGGLDEVQIKQIDDEYQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCHHHH
YMVNLQKRKEEVIKNIEQQGLLTEELKKDILKQNKLQRVEDLYRPFKQKKKTRATEAKRK
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLEPLAIWMKARKHEVSIEEKAQQFINEEVQSVEDAIKGAQDIIAEQISDNPKYRTKILK
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DMYHQGVLTTSKKKNAEDEKGIFEMYYEYSEPIKRIANHRVLAVNRGEKEKVLSVKFEFD
HHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEEEECC
TTSVEDFIARQEINHNNVNRSYILEAIKDSLKRLIVPSIEREIHADLTEKAENHAIDVFS
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENLRNLLLQPPMKGKQILGVDPAFRTGCKLAAINPFGTFIAKGVIYPHPSVSKKEAAEKD
HHHHHHHCCCCCCCCEEECCCHHHHCCCCEEEECHHHHHHHCCCCCCCCCCCHHHHHHHH
FVQMVKAYDVQLIAIGNGTASRETEQFVADLIKKHQLPVQFIIVNEAGASVYSASEIARD
HHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
EFPDFQVEERSAVSIGRRVQDPLSELVKIDPKSIGVGQYQHDVNQKALENALTFVVETAV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NQVGVDINTASSSLLQYVSGLSSQIAKNIIAYREENGAIKHNKELSKIKRLGAKTFEQSI
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
GFLRIVDGSEPLDNTSIHPESYKVTYKLLDKLGFGGNDLGSDALKAKLNSLDMDELAIEL
CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHEEEE
QVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLKEGMKLSGTVRNVVDFGAFV
EECCCHHHHHHHHHCCCCCCCCHHHCCCCHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHE
DIGVKQDGLVHVSTLSKKFVKNPMDIVSVGDIVDVWIYSIDKNKDKVSLTMIDPHE
EECCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]