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The map label for this gene is sec-variant

Identifier: 82751420

GI number: 82751420

Start: 1840332

End: 1841117

Strand: Reverse

Name: sec-variant

Synonym: SAB1698c

Alternate gene names: 82751420

Gene position: 1841117-1840332 (Counterclockwise)

Preceding gene: 82751421

Following gene: 82751419

Centisome position: 67.13

GC content: 26.84

Gene sequence:

>786_bases
ATGAAGTTATTTGCTTTTATCTTCATATGTGTTAAGTCTTGCAGCTTACTATTTATGTTAAATGGCAATCCTAGACCAGA
ACAATTGAATAAAGCGAGTGAATTCACTGGTCTAATGGATAATATGAGGTATTTGTATGACGATAAACACGTATCAGAAA
CAAACATTAAAGCCCAAGAGAAGTTTTTACAACATGATTTATTATTTAAAATAAATGGCTCTAAAATTGATGGTTCTAAA
ATTTTAAAAACAGAATTTAATAATAAAAGCCTTTCGGATAAATACAAAAATAAAAACGTAGATTTGTTTGGGACAAACTA
TTATAATCAATGCTATTTTTCAGCGGATAATATGGAATTAAATGATGGTAGACTAATTGAAAAAACGTGTATGTATGGCG
GTGTGACCGAGCATGATGGAAATCAAATAGATAAAAATAATCTAACTGATAACTCTCATAATATCTTAATTAAAGTATAC
GAAAACGAAAGAAACACATTATCTTTTGATATATCTACCAATAAGAAAAACATAACAGCACAAGAAATAGATTATAAAGT
TAGAAACTATTTACTTAAGCATAAAAATTTATATGAATTTAATAGTTCGCCTTATGAGACTGGCTATATAAAGTTTATCG
AAGGAAATAGTCATTCATTTTGGTATGATATGATGCCTGAATCTGGTGAAAAATTTTATCCGACTAAATATTTACTAATT
TATAATGATAATAAGACAGTTGAGAGTAAATCTATTAATGTAGAAGTTCATTTAACCAAAAAATAA

Upstream 100 bases:

>100_bases
TTAACTATTTAAATTTTAATGACTTTAAGGGTAATGTGTACGTTTAATATTACCTGGAATACATCAAATTTATAAAAATT
TAAAATATGGAGTTGTTGGA

Downstream 100 bases:

>100_bases
TTGAGGGAGAGTATATTATAAAAAATATTAAAAAGTTTATGAGATTGTTCTACATAGCTGTAATTATAATAACTTTATTA
TGTCTTATAAATAATAAATA

Product: enterotoxin type C variant

Products: NA

Alternate protein names: SEC1 [H]

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MKLFAFIFICVKSCSLLFMLNGNPRPEQLNKASEFTGLMDNMRYLYDDKHVSETNIKAQEKFLQHDLLFKINGSKIDGSK
ILKTEFNNKSLSDKYKNKNVDLFGTNYYNQCYFSADNMELNDGRLIEKTCMYGGVTEHDGNQIDKNNLTDNSHNILIKVY
ENERNTLSFDISTNKKNITAQEIDYKVRNYLLKHKNLYEFNSSPYETGYIKFIEGNSHSFWYDMMPESGEKFYPTKYLLI
YNDNKTVESKSINVEVHLTKK

Sequences:

>Translated_261_residues
MKLFAFIFICVKSCSLLFMLNGNPRPEQLNKASEFTGLMDNMRYLYDDKHVSETNIKAQEKFLQHDLLFKINGSKIDGSK
ILKTEFNNKSLSDKYKNKNVDLFGTNYYNQCYFSADNMELNDGRLIEKTCMYGGVTEHDGNQIDKNNLTDNSHNILIKVY
ENERNTLSFDISTNKKNITAQEIDYKVRNYLLKHKNLYEFNSSPYETGYIKFIEGNSHSFWYDMMPESGEKFYPTKYLLI
YNDNKTVESKSINVEVHLTKK
>Mature_261_residues
MKLFAFIFICVKSCSLLFMLNGNPRPEQLNKASEFTGLMDNMRYLYDDKHVSETNIKAQEKFLQHDLLFKINGSKIDGSK
ILKTEFNNKSLSDKYKNKNVDLFGTNYYNQCYFSADNMELNDGRLIEKTCMYGGVTEHDGNQIDKNNLTDNSHNILIKVY
ENERNTLSFDISTNKKNITAQEIDYKVRNYLLKHKNLYEFNSSPYETGYIKFIEGNSHSFWYDMMPESGEKFYPTKYLLI
YNDNKTVESKSINVEVHLTKK

Specific function: Staphylococcal enterotoxins cause the intoxication staphylococcal food poisoning syndrome. The illness characterized by high fever, hypotension, diarrhea, shock, and in some cases death [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the staphylococcal/streptococcal toxin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008992
- InterPro:   IPR006126
- InterPro:   IPR006173
- InterPro:   IPR016091
- InterPro:   IPR013307
- InterPro:   IPR006123
- InterPro:   IPR006177 [H]

Pfam domain/function: PF02876 Stap_Strp_tox_C; PF01123 Stap_Strp_toxin [H]

EC number: NA

Molecular weight: Translated: 30591; Mature: 30591

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS00277 STAPH_STREP_TOXIN_1 ; PS00278 STAPH_STREP_TOXIN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFAFIFICVKSCSLLFMLNGNPRPEQLNKASEFTGLMDNMRYLYDDKHVSETNIKAQE
CHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
KFLQHDLLFKINGSKIDGSKILKTEFNNKSLSDKYKNKNVDLFGTNYYNQCYFSADNMEL
HHHCCCEEEEECCCEECCCEEEEEECCCCCCCHHHCCCCEEEEECCCCCEEEEECCCEEC
NDGRLIEKTCMYGGVTEHDGNQIDKNNLTDNSHNILIKVYENERNTLSFDISTNKKNITA
CCCEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCH
QEIDYKVRNYLLKHKNLYEFNSSPYETGYIKFIEGNSHSFWYDMMPESGEKFYPTKYLLI
HHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCEECCEEEEEE
YNDNKTVESKSINVEVHLTKK
ECCCCEEECEEEEEEEEEECC
>Mature Secondary Structure
MKLFAFIFICVKSCSLLFMLNGNPRPEQLNKASEFTGLMDNMRYLYDDKHVSETNIKAQE
CHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
KFLQHDLLFKINGSKIDGSKILKTEFNNKSLSDKYKNKNVDLFGTNYYNQCYFSADNMEL
HHHCCCEEEEECCCEECCCEEEEEECCCCCCCHHHCCCCEEEEECCCCCEEEEECCCEEC
NDGRLIEKTCMYGGVTEHDGNQIDKNNLTDNSHNILIKVYENERNTLSFDISTNKKNITA
CCCEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCH
QEIDYKVRNYLLKHKNLYEFNSSPYETGYIKFIEGNSHSFWYDMMPESGEKFYPTKYLLI
HHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCEECCEEEEEE
YNDNKTVESKSINVEVHLTKK
ECCCCEEECEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2823067; 6189824 [H]