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The map label for this gene is sigS [H]

Identifier: 82751363

GI number: 82751363

Start: 1781585

End: 1782070

Strand: Direct

Name: sigS [H]

Synonym: SAB1635

Alternate gene names: 82751363

Gene position: 1781585-1782070 (Clockwise)

Preceding gene: 82751360

Following gene: 82751364

Centisome position: 64.96

GC content: 28.6

Gene sequence:

>486_bases
TTGGAGAATGACTACTTGAAATTTAATGACGTATACAACAAGCACCACAAAATCATACACCATCTTTTAAAAAAATATAA
TATTAGCTATAATTATGATGAGTATTATCAACTACTCTTGATAAAAATGTGGCAATTGAGTCAGATATATAAACCCTCAA
GCAAGCAATCTTTATCCTCTTTTTTATTCACTCGATTAAATTTTTACCTTATCGATTTATTCAGACAACAAAATCAATTA
AAAGATGTCATTTTATGTGAGAATAATTCACCAACATTAACTGAACAACCAACATACTTTAATGAACATGACCTTCGTTT
ACAAGATATCTTCAAGTTTTTAAATCATAGAGAAAGACTATGGCTCAAACTATACCTTGAAGGATACAAGCAATTTGAAA
TTGCTGAAATCATGTCGTTATCGCTTTCAACGATTAAATTAATTAAGACATCCGTTAAGCGTAAATGCCAACATAATTTT
AAATAG

Upstream 100 bases:

>100_bases
TGTCTTATATTTAACACTTAATTTAGCGATTACGCAAATGAATGATTTTTCTAAATATTTTATTCTAACTTTATCCGGAA
ATATTTGTTATACGTATAAC

Downstream 100 bases:

>100_bases
TTTATTGTGAAATTTCGGTCGATGTGTTAATGATGTTGAAACACCCTAACATCTTCATATAAATTTATTTTAACCATTAA
ATTAACAACTTATTATACGA

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MENDYLKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLLLIKMWQLSQIYKPSSKQSLSSFLFTRLNFYLIDLFRQQNQL
KDVILCENNSPTLTEQPTYFNEHDLRLQDIFKFLNHRERLWLKLYLEGYKQFEIAEIMSLSLSTIKLIKTSVKRKCQHNF
K

Sequences:

>Translated_161_residues
MENDYLKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLLLIKMWQLSQIYKPSSKQSLSSFLFTRLNFYLIDLFRQQNQL
KDVILCENNSPTLTEQPTYFNEHDLRLQDIFKFLNHRERLWLKLYLEGYKQFEIAEIMSLSLSTIKLIKTSVKRKCQHNF
K
>Mature_161_residues
MENDYLKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLLLIKMWQLSQIYKPSSKQSLSSFLFTRLNFYLIDLFRQQNQL
KDVILCENNSPTLTEQPTYFNEHDLRLQDIFKFLNHRERLWLKLYLEGYKQFEIAEIMSLSLSTIKLIKTSVKRKCQHNF
K

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-S contributes to the protection against external stress, thus playing a role in cellular fitness and survival [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 19798; Mature: 19798

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENDYLKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLLLIKMWQLSQIYKPSSKQSLSS
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
FLFTRLNFYLIDLFRQQNQLKDVILCENNSPTLTEQPTYFNEHDLRLQDIFKFLNHRERL
HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
WLKLYLEGYKQFEIAEIMSLSLSTIKLIKTSVKRKCQHNFK
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MENDYLKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLLLIKMWQLSQIYKPSSKQSLSS
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
FLFTRLNFYLIDLFRQQNQLKDVILCENNSPTLTEQPTYFNEHDLRLQDIFKFLNHRERL
HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
WLKLYLEGYKQFEIAEIMSLSLSTIKLIKTSVKRKCQHNFK
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA