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The map label for this gene is radC

Identifier: 82751250

GI number: 82751250

Start: 1638623

End: 1639309

Strand: Reverse

Name: radC

Synonym: SAB1521c

Alternate gene names: 82751250

Gene position: 1639309-1638623 (Counterclockwise)

Preceding gene: 82751251

Following gene: 82751249

Centisome position: 59.77

GC content: 32.31

Gene sequence:

>687_bases
TTGGAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTTGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCTATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCAATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGAGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Upstream 100 bases:

>100_bases
CGATAAAACTATTACCCCTTGTTCCATTTATATTTATTTCCTTTTTTATCAATTCACTTTTTTATAATGATATCCATCAA
TTTTTAGGAGGCGTATATTT

Downstream 100 bases:

>100_bases
AGTTAATAGAATTAATGACGTATCTTGTGTATAATACCTACGAAGTACTTTCATTGGAGGAAAAATAGTGACTCTATTTA
TTATTATCGGGGTTCTCGTG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MEIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFLSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKESGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Sequences:

>Translated_228_residues
MEIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFLSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKESGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND
>Mature_228_residues
MEIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFLSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKESGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=217, Percent_Identity=35.0230414746544, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI1788997, Length=142, Percent_Identity=37.3239436619718, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1788312, Length=122, Percent_Identity=38.5245901639344, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI2367100, Length=122, Percent_Identity=37.7049180327869, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1521_STAAB (Q2YT78)

Other databases:

- EMBL:   AJ938182
- RefSeq:   YP_416991.1
- ProteinModelPortal:   Q2YT78
- SMR:   Q2YT78
- STRING:   Q2YT78
- EnsemblBacteria:   EBSTAT00000012476
- GeneID:   3794270
- GenomeReviews:   AJ938182_GR
- KEGG:   sab:SAB1521c
- NMPDR:   fig|273036.3.peg.1454
- eggNOG:   COG2003
- GeneTree:   EBGT00050000023963
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- PhylomeDB:   Q2YT78
- ProtClustDB:   PRK00024
- BioCyc:   SAUR273036:SAB1521C-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25309; Mature: 25309

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFLSIDISNELLKSASNLNEL
CCHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHH
KKSSINDLIQVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDL
HHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHC
TQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDV
CCCCEEEEEECCCCEEEEECEEEEECCCCCCCCHHHHHEEEEECCCCEEEEEECCCCCCC
TPSQEDIITTMRLKESGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND
CCCHHHHHHHEEECCCCCEEEHHHHHHEEECCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFLSIDISNELLKSASNLNEL
CCHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHH
KKSSINDLIQVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDL
HHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHC
TQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDV
CCCCEEEEEECCCCEEEEECEEEEECCCCCCCCHHHHHEEEEECCCCEEEEEECCCCCCC
TPSQEDIITTMRLKESGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND
CCCHHHHHHHEEECCCCCEEEHHHHHHEEECCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA