| Definition | Staphylococcus aureus RF122, complete genome. |
|---|---|
| Accession | NC_007622 |
| Length | 2,742,531 |
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The map label for this gene is dtd
Identifier: 82751231
GI number: 82751231
Start: 1619710
End: 1620162
Strand: Reverse
Name: dtd
Synonym: SAB1502c
Alternate gene names: 82751231
Gene position: 1620162-1619710 (Counterclockwise)
Preceding gene: 82751232
Following gene: 82751230
Centisome position: 59.08
GC content: 32.01
Gene sequence:
>453_bases ATGAAAGTAGTTGTACAAAGAGTTAAAGAAGCATCGGTGACGAATGATACATTAAATAATCAAATCAAAAAAGGATATTG TTTATTAGTCGGTATCGGTCAGGACTCTACAGAGCAAGATGCAGATGTAATTGCAAAGAAAATTGCTAATGCAAGATTAT TTGAAGATGACAATAATAAATTAAACTTTAATATCCAACAAGTGAATGGTGAAATACTATCAGTTTCACAATTTACTCTC TATGCAGATGTAAAAAAAGGTAACCGTCCAGGTTTCTCAAATTCTAAAAATCCTGATCAAGCAGTAAAAATATATGAGTA TTTTAATGATGCGCTACGAGCGTATGGTCTTACTGTGAAAACAGGTGAATTTGGAACACACATGAATGTTAACATAAATA ATGATGGTCCAGTCACTATTATTTATGAAAGTCAGGACGGCAAAATTCAATGA
Upstream 100 bases:
>100_bases TGGTGAAAAACGTGAATGATGTTTATCGTGTGGTAGAAAAGATCAAACAACTTGGTGATGTTTATACAGTAACAAGAGTT TGGAACTAGAGGTGCAAAAT
Downstream 100 bases:
>100_bases AAAAAATAGAGGCATGGTTATCTAAAAAGGGTCTTAAAAATAAACGTACTCTAATAGTAGTGATTGCCTTTGTCTTATTT ATCATCTTTTTATTTTTATT
Product: D-tyrosyl-tRNA(Tyr) deacylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 150; Mature: 150
Protein sequence:
>150_residues MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQDSTEQDADVIAKKIANARLFEDDNNKLNFNIQQVNGEILSVSQFTL YADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVKTGEFGTHMNVNINNDGPVTIIYESQDGKIQ
Sequences:
>Translated_150_residues MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQDSTEQDADVIAKKIANARLFEDDNNKLNFNIQQVNGEILSVSQFTL YADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVKTGEFGTHMNVNINNDGPVTIIYESQDGKIQ >Mature_150_residues MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQDSTEQDADVIAKKIANARLFEDDNNKLNFNIQQVNGEILSVSQFTL YADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVKTGEFGTHMNVNINNDGPVTIIYESQDGKIQ
Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine [H]
COG id: COG1490
COG function: function code J; D-Tyr-tRNAtyr deacylase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTD family [H]
Homologues:
Organism=Homo sapiens, GI30795227, Length=148, Percent_Identity=42.5675675675676, Blast_Score=100, Evalue=3e-22, Organism=Escherichia coli, GI1790320, Length=144, Percent_Identity=39.5833333333333, Blast_Score=121, Evalue=2e-29, Organism=Caenorhabditis elegans, GI115533292, Length=150, Percent_Identity=41.3333333333333, Blast_Score=109, Evalue=5e-25, Organism=Saccharomyces cerevisiae, GI6319982, Length=148, Percent_Identity=46.6216216216216, Blast_Score=122, Evalue=3e-29, Organism=Drosophila melanogaster, GI281361569, Length=151, Percent_Identity=43.046357615894, Blast_Score=114, Evalue=3e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003732 [H]
Pfam domain/function: PF02580 Tyr_Deacylase [H]
EC number: NA
Molecular weight: Translated: 16693; Mature: 16693
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQDSTEQDADVIAKKIANARLFEDDNNK CHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCE LNFNIQQVNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVK EEEEEEEECCEEEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEE TGEFGTHMNVNINNDGPVTIIYESQDGKIQ CCCCCCEEEEEECCCCCEEEEEECCCCCCC >Mature Secondary Structure MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQDSTEQDADVIAKKIANARLFEDDNNK CHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCE LNFNIQQVNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVK EEEEEEEECCEEEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEE TGEFGTHMNVNINNDGPVTIIYESQDGKIQ CCCCCCEEEEEECCCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA