Definition Staphylococcus aureus RF122, complete genome.
Accession NC_007622
Length 2,742,531

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The map label for this gene is dtd

Identifier: 82751231

GI number: 82751231

Start: 1619710

End: 1620162

Strand: Reverse

Name: dtd

Synonym: SAB1502c

Alternate gene names: 82751231

Gene position: 1620162-1619710 (Counterclockwise)

Preceding gene: 82751232

Following gene: 82751230

Centisome position: 59.08

GC content: 32.01

Gene sequence:

>453_bases
ATGAAAGTAGTTGTACAAAGAGTTAAAGAAGCATCGGTGACGAATGATACATTAAATAATCAAATCAAAAAAGGATATTG
TTTATTAGTCGGTATCGGTCAGGACTCTACAGAGCAAGATGCAGATGTAATTGCAAAGAAAATTGCTAATGCAAGATTAT
TTGAAGATGACAATAATAAATTAAACTTTAATATCCAACAAGTGAATGGTGAAATACTATCAGTTTCACAATTTACTCTC
TATGCAGATGTAAAAAAAGGTAACCGTCCAGGTTTCTCAAATTCTAAAAATCCTGATCAAGCAGTAAAAATATATGAGTA
TTTTAATGATGCGCTACGAGCGTATGGTCTTACTGTGAAAACAGGTGAATTTGGAACACACATGAATGTTAACATAAATA
ATGATGGTCCAGTCACTATTATTTATGAAAGTCAGGACGGCAAAATTCAATGA

Upstream 100 bases:

>100_bases
TGGTGAAAAACGTGAATGATGTTTATCGTGTGGTAGAAAAGATCAAACAACTTGGTGATGTTTATACAGTAACAAGAGTT
TGGAACTAGAGGTGCAAAAT

Downstream 100 bases:

>100_bases
AAAAAATAGAGGCATGGTTATCTAAAAAGGGTCTTAAAAATAAACGTACTCTAATAGTAGTGATTGCCTTTGTCTTATTT
ATCATCTTTTTATTTTTATT

Product: D-tyrosyl-tRNA(Tyr) deacylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQDSTEQDADVIAKKIANARLFEDDNNKLNFNIQQVNGEILSVSQFTL
YADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVKTGEFGTHMNVNINNDGPVTIIYESQDGKIQ

Sequences:

>Translated_150_residues
MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQDSTEQDADVIAKKIANARLFEDDNNKLNFNIQQVNGEILSVSQFTL
YADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVKTGEFGTHMNVNINNDGPVTIIYESQDGKIQ
>Mature_150_residues
MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQDSTEQDADVIAKKIANARLFEDDNNKLNFNIQQVNGEILSVSQFTL
YADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVKTGEFGTHMNVNINNDGPVTIIYESQDGKIQ

Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine [H]

COG id: COG1490

COG function: function code J; D-Tyr-tRNAtyr deacylase

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DTD family [H]

Homologues:

Organism=Homo sapiens, GI30795227, Length=148, Percent_Identity=42.5675675675676, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1790320, Length=144, Percent_Identity=39.5833333333333, Blast_Score=121, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI115533292, Length=150, Percent_Identity=41.3333333333333, Blast_Score=109, Evalue=5e-25,
Organism=Saccharomyces cerevisiae, GI6319982, Length=148, Percent_Identity=46.6216216216216, Blast_Score=122, Evalue=3e-29,
Organism=Drosophila melanogaster, GI281361569, Length=151, Percent_Identity=43.046357615894, Blast_Score=114, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003732 [H]

Pfam domain/function: PF02580 Tyr_Deacylase [H]

EC number: NA

Molecular weight: Translated: 16693; Mature: 16693

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQDSTEQDADVIAKKIANARLFEDDNNK
CHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCE
LNFNIQQVNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVK
EEEEEEEECCEEEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEE
TGEFGTHMNVNINNDGPVTIIYESQDGKIQ
CCCCCCEEEEEECCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQDSTEQDADVIAKKIANARLFEDDNNK
CHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCE
LNFNIQQVNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVK
EEEEEEEECCEEEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEE
TGEFGTHMNVNINNDGPVTIIYESQDGKIQ
CCCCCCEEEEEECCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA