Click here to switch to the map view.

The map label for this gene is ebsB [H]

Identifier: 82751024

GI number: 82751024

Start: 1402728

End: 1403129

Strand: Direct

Name: ebsB [H]

Synonym: SAB1288

Alternate gene names: 82751024

Gene position: 1402728-1403129 (Clockwise)

Preceding gene: 82751023

Following gene: 82751030

Centisome position: 51.15

GC content: 33.58

Gene sequence:

>402_bases
ATGGCGAAAATAAATTTTGATGCTGCGACGAAAGGAAATCCAGGCATAAGTACATGTGCCATTGTAATCAAAGAAGATGA
GCAACATTATACATATACACATGAGTTAGGCGAAATGGATAACCACACTGCAGAATGGGCTGCTTGTATTTATGCACTAG
GACATGCACGTGAATTAAATGTTAGCAATGCGTTGTTGTACACTGACTCTAAGTTAATTGCGGATAGCATTGAAGCTGGT
TATGTGAAAAACGCAAATTTCAAACCTTATTTTGATCAAATAGAAATATTTGAAAAAAGTTTTGATTTATTATTTGTTAA
GTGGATACCGAGAGAACAAAACAAAGAAGCGAATCAACACGCTCAACAGGCATTGTATAAATTAATTAAAAAGAATAAAT
AA

Upstream 100 bases:

>100_bases
CTTATTTAAGTGATGCGTGTTTTTTAATGGATTACCCAACATATTTTGTATTACAGTAATAGTAACTTTAACTAAGTATT
GAATAGAAAGTAGGTTTATT

Downstream 100 bases:

>100_bases
AAGGAGCACCGACTGATGTGATGTCAATCGGTGCTCCTCTATTTATCAAAGAAACAAATTATTTTTCTTAGATTTCTTTT
TCTTCTTTTTAGCTGTTACC

Product: cell wall enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MAKINFDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALGHARELNVSNALLYTDSKLIADSIEAG
YVKNANFKPYFDQIEIFEKSFDLLFVKWIPREQNKEANQHAQQALYKLIKKNK

Sequences:

>Translated_133_residues
MAKINFDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALGHARELNVSNALLYTDSKLIADSIEAG
YVKNANFKPYFDQIEIFEKSFDLLFVKWIPREQNKEANQHAQQALYKLIKKNK
>Mature_132_residues
AKINFDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALGHARELNVSNALLYTDSKLIADSIEAGY
VKNANFKPYFDQIEIFEKSFDLLFVKWIPREQNKEANQHAQQALYKLIKKNK

Specific function: Affects the expression of the receptor, named binding substance, that mediates mating aggregate formation. May function as a cell wall hydrolase [H]

COG id: COG0328

COG function: function code L; Ribonuclease HI

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR002156 [H]

Pfam domain/function: PF00075 RnaseH [H]

EC number: NA

Molecular weight: Translated: 15213; Mature: 15082

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKINFDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALGHARELN
CCEECCCCCCCCCCCCEEEEEEEECCCCCEEHHHHHCCCCCCHHHHHHHHHHHCCCCCCC
VSNALLYTDSKLIADSIEAGYVKNANFKPYFDQIEIFEKSFDLLFVKWIPREQNKEANQH
CCCEEEEECCHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHH
AQQALYKLIKKNK
HHHHHHHHHHCCC
>Mature Secondary Structure 
AKINFDAATKGNPGISTCAIVIKEDEQHYTYTHELGEMDNHTAEWAACIYALGHARELN
CEECCCCCCCCCCCCEEEEEEEECCCCCEEHHHHHCCCCCCHHHHHHHHHHHCCCCCCC
VSNALLYTDSKLIADSIEAGYVKNANFKPYFDQIEIFEKSFDLLFVKWIPREQNKEANQH
CCCEEEEECCHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHH
AQQALYKLIKKNK
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226689; 12663927 [H]