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The map label for this gene is lysA

Identifier: 82750991

GI number: 82750991

Start: 1371255

End: 1372520

Strand: Direct

Name: lysA

Synonym: SAB1255

Alternate gene names: 82750991

Gene position: 1371255-1372520 (Clockwise)

Preceding gene: 82750990

Following gene: 82750996

Centisome position: 50.0

GC content: 33.73

Gene sequence:

>1266_bases
ATGACTGTTAAATATAATCAAAATGGCGAATTAGCAATGGATGGTATTAGTTTAAAAACGATTGCGCAAAGCTTTGGTAC
ACCTACCATTGTTTATGATGAACTGCAAATTAGAGAACAGATGCGCCGTTACCATCGCGCATTTAAAGATAGTGGATTAA
AATACAATATTTCATACGCCTCAAAGGCATTTACTTGCATTCAAATGGTCAAACTTGTAGCTGAGGAAGATTTACAGTTA
GATGTTGTTTCTGAAGGTGAATTATATAGAGCTTTAGAAGCAGGTTTTGAACCGAGTCGCATCCATTTCCATGGTAACAA
TAAAACGAAACATGAAATTAGGTATGCTTTAGAAAATAATATCGGTTATTTTGTTATAGATTCATTAGAAGAAATTGAAT
TAATAGACCGCTATGCTAATGATACGGTTCAAGTTGTATTACGAGTTAATCCAGGTGTTGAAGCACATACACACGAATTT
ATTCAAACTGGTCAAGAAGATAGTAAGTTTGGATTATCAATTCAATATGGCTTGGCTAAAAAAGCAATTAACAACGTGCA
ACAATCTAAATATCTTAAATTAAAAGGTGTACATTGCCATATTGGTTCACAGATTGAAGGTACAGAAGCGTTTATTGAAA
CTGCTAAAATTGTTTTACGTTGGCTTAAAGAGCAAGGCATTCAAGTTGAATTATTAAACCTTGGTGGTGGCTTTGGTATT
AAATATGTTGAAGGTGACGAAAGTTTCCCTATCGAAAGTGGTATTAAAGATATTACAGACGCAATAAAATCTGAAATTAA
ATTTCTAGGTATAGATGCACCAGAAATAGGTATTGAACCGGGACGATCTATTGTAGGTGAAGCTGGCGTTACTTTATATG
AAGTTGGAACCATTAAAGAAATTCCAGAGATTAATAAATATGTTTCAATCGATGGCGGTATGAGTGATCATATCAGAACT
GCACTTTATGACGCAAAGTATCAAGCATTGCTTGTTAATAGAAATGAAGAAGCAGATGACAGTGTAACTATAGCTGGAAA
ATTATGTGAGTCTGGTGATATCATTATTAAAGACGCTAAATTACCTTCATCAGTCAAACGTGGAGACTATCTTGCTATAT
TATCAACTGGTGCATATCATTACTCTATGGCATCCAATTACAATCAAATGCAAAAGCCTTCTGTGTTTTTCTTAAAAGAT
GGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAA

Upstream 100 bases:

>100_bases
GATATCCGCATCGATGAATATACCTTTAAAGGTGTTGGTGCAAATTCTGAACAATTAAGTGCTATGAATCATGATTCTTT
AAAAAAGGAGTACATTTCAA

Downstream 100 bases:

>100_bases
AAATAAATAAAGTAATCCCCGAAGAACAGAAAATTATACTGTGACTCGGGGAATTTTTAAGATTATTTAATTAAGAGTTT
ATTGCTTGTTGGTTTATGAA

Product: diaminopimelate decarboxylase

Products: NA

Alternate protein names: DAP decarboxylase [H]

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MTVKYNQNGELAMDGISLKTIAQSFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYASKAFTCIQMVKLVAEEDLQL
DVVSEGELYRALEAGFEPSRIHFHGNNKTKHEIRYALENNIGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEF
IQTGQEDSKFGLSIQYGLAKKAINNVQQSKYLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGI
KYVEGDESFPIESGIKDITDAIKSEIKFLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKEIPEINKYVSIDGGMSDHIRT
ALYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAKLPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKD
GKAREVIKRQSLRQLIINDTK

Sequences:

>Translated_421_residues
MTVKYNQNGELAMDGISLKTIAQSFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYASKAFTCIQMVKLVAEEDLQL
DVVSEGELYRALEAGFEPSRIHFHGNNKTKHEIRYALENNIGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEF
IQTGQEDSKFGLSIQYGLAKKAINNVQQSKYLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGI
KYVEGDESFPIESGIKDITDAIKSEIKFLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKEIPEINKYVSIDGGMSDHIRT
ALYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAKLPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKD
GKAREVIKRQSLRQLIINDTK
>Mature_420_residues
TVKYNQNGELAMDGISLKTIAQSFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYASKAFTCIQMVKLVAEEDLQLD
VVSEGELYRALEAGFEPSRIHFHGNNKTKHEIRYALENNIGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEFI
QTGQEDSKFGLSIQYGLAKKAINNVQQSKYLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGIK
YVEGDESFPIESGIKDITDAIKSEIKFLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKEIPEINKYVSIDGGMSDHIRTA
LYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAKLPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKDG
KAREVIKRQSLRQLIINDTK

Specific function: Lysine biosynthesis; last step. [C]

COG id: COG0019

COG function: function code E; Diaminopimelate decarboxylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-II family [H]

Homologues:

Organism=Escherichia coli, GI1789203, Length=417, Percent_Identity=31.6546762589928, Blast_Score=152, Evalue=3e-38,
Organism=Saccharomyces cerevisiae, GI6322664, Length=374, Percent_Identity=22.7272727272727, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24586472, Length=355, Percent_Identity=24.5070422535211, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009006
- InterPro:   IPR002986
- InterPro:   IPR022643
- InterPro:   IPR022657
- InterPro:   IPR022644
- InterPro:   IPR022653
- InterPro:   IPR000183 [H]

Pfam domain/function: PF02784 Orn_Arg_deC_N; PF00278 Orn_DAP_Arg_deC [H]

EC number: =4.1.1.20 [H]

Molecular weight: Translated: 47119; Mature: 46988

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS00879 ODR_DC_2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVKYNQNGELAMDGISLKTIAQSFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYA
CEEEECCCCCEEECCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHH
SKAFTCIQMVKLVAEEDLQLDVVSEGELYRALEAGFEPSRIHFHGNNKTKHEIRYALENN
HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCC
IGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEFIQTGQEDSKFGLSIQYGLAK
CCEEEECCHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEHHHHH
KAINNVQQSKYLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGI
HHHHHHHHHCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE
KYVEGDESFPIESGIKDITDAIKSEIKFLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKE
EEEECCCCCCHHCCHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHCCCCEEEEECCCCCC
IPEINKYVSIDGGMSDHIRTALYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAK
CCCCCCEEEECCCCHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEEEECCCCCEEEECCC
LPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKDGKAREVIKRQSLRQLIINDT
CCCCCCCCCEEEEEECCCEEEEHHCCCCHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
K
C
>Mature Secondary Structure 
TVKYNQNGELAMDGISLKTIAQSFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYA
EEEECCCCCEEECCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHH
SKAFTCIQMVKLVAEEDLQLDVVSEGELYRALEAGFEPSRIHFHGNNKTKHEIRYALENN
HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCC
IGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEFIQTGQEDSKFGLSIQYGLAK
CCEEEECCHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEHHHHH
KAINNVQQSKYLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGI
HHHHHHHHHCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE
KYVEGDESFPIESGIKDITDAIKSEIKFLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKE
EEEECCCCCCHHCCHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHCCCCEEEEECCCCCC
IPEINKYVSIDGGMSDHIRTALYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAK
CCCCCCEEEECCCCHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEEEECCCCCEEEECCC
LPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKDGKAREVIKRQSLRQLIINDT
CCCCCCCCCEEEEEECCCEEEEHHCCCCHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2513554; 7934829; 1368705; 8969508; 9384377 [H]