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The map label for this gene is dapD

Identifier: 82750988

GI number: 82750988

Start: 1368162

End: 1368881

Strand: Direct

Name: dapD

Synonym: SAB1252

Alternate gene names: 82750988

Gene position: 1368162-1368881 (Clockwise)

Preceding gene: 82750987

Following gene: 82750989

Centisome position: 49.89

GC content: 37.64

Gene sequence:

>720_bases
ATGGTACAACATTTAACAGCTGAAGAAATTATTCAATATATAAGTGATGCTAAAAAGTCTACACCAATAAAAGTATATTT
AAATGGTAATTTTGAAGGCATCACATATCCAGAAAGTTTTAAAGTATTTGGTTCAGAACAATCTAAAGTAATCTTTTGTG
AAGCAGATGATTGGAAACCTTTTTACGAAACATATGGTAGTCAATTCGAAGATATAGAAATTGAAATGGATCGTCGCAAT
TCTGCCATTCCATTAAAAGACTTAACAAATACTAATGCACGTATTGAACCAGGTGCATTTATTAGAGAACAAGCTATTAT
TGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACGATGATTGATATGA
ATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGCGTGATTGAA
CCCCCTAGTGCTTCACCAGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGT
TGGTAAAGGTGCTATTGTTGCAGCTGGCGCGATTGTGACACAAGATGTACCAGCTGGTACAGTTGTTGCTGGTACACCTG
CGAAAGTGATTAAGCAAGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAG

Upstream 100 bases:

>100_bases
CGAATGGTGCAATACAAGCAGCAGAACGCTTAGTTAATAAACCAAACGGCTTTTATACGTTTGACAACCTATAAACATAT
TAAAGGAGATCGATTATTTT

Downstream 100 bases:

>100_bases
TGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTATCATTGAATAAACTTATGA
TCACAAATTTCGAAATACGT

Product: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-acetyltransferase; THP acetyltransferase; Tetrahydropicolinate acetylase [H]

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MVQHLTAEEIIQYISDAKKSTPIKVYLNGNFEGITYPESFKVFGSEQSKVIFCEADDWKPFYETYGSQFEDIEIEMDRRN
SAIPLKDLTNTNARIEPGAFIREQAIIEDGAVVMMGATINIGAVVGEGTMIDMNATLGGRATTGKNVHVGAGAVLAGVIE
PPSASPVIIEDDVLIGANAVILEGVRVGKGAIVAAGAIVTQDVPAGTVVAGTPAKVIKQASEVQDTKKEIVAALRKLND

Sequences:

>Translated_239_residues
MVQHLTAEEIIQYISDAKKSTPIKVYLNGNFEGITYPESFKVFGSEQSKVIFCEADDWKPFYETYGSQFEDIEIEMDRRN
SAIPLKDLTNTNARIEPGAFIREQAIIEDGAVVMMGATINIGAVVGEGTMIDMNATLGGRATTGKNVHVGAGAVLAGVIE
PPSASPVIIEDDVLIGANAVILEGVRVGKGAIVAAGAIVTQDVPAGTVVAGTPAKVIKQASEVQDTKKEIVAALRKLND
>Mature_239_residues
MVQHLTAEEIIQYISDAKKSTPIKVYLNGNFEGITYPESFKVFGSEQSKVIFCEADDWKPFYETYGSQFEDIEIEMDRRN
SAIPLKDLTNTNARIEPGAFIREQAIIEDGAVVMMGATINIGAVVGEGTMIDMNATLGGRATTGKNVHVGAGAVLAGVIE
PPSASPVIIEDDVLIGANAVILEGVRVGKGAIVAAGAIVTQDVPAGTVVAGTPAKVIKQASEVQDTKKEIVAALRKLND

Specific function: Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate [H]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family. DapH subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=131, Percent_Identity=41.2213740458015, Blast_Score=82, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6322243, Length=139, Percent_Identity=31.6546762589928, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013710
- InterPro:   IPR018357
- InterPro:   IPR019873
- InterPro:   IPR011004 [H]

Pfam domain/function: PF08503 DapD_N [H]

EC number: =2.3.1.89 [H]

Molecular weight: Translated: 25318; Mature: 25318

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQHLTAEEIIQYISDAKKSTPIKVYLNGNFEGITYPESFKVFGSEQSKVIFCEADDWKP
CCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCEEEECCCCCEEEEEECCCCCH
FYETYGSQFEDIEIEMDRRNSAIPLKDLTNTNARIEPGAFIREQAIIEDGAVVMMGATIN
HHHHHCCCCEEEEEEECCCCCCCCHHHCCCCCCEECCCCHHHHHHHHCCCCEEEEECEEE
IGAVVGEGTMIDMNATLGGRATTGKNVHVGAGAVLAGVIEPPSASPVIIEDDVLIGANAV
EEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEEEECCCCCCCEEEECCEEECCCEE
ILEGVRVGKGAIVAAGAIVTQDVPAGTVVAGTPAKVIKQASEVQDTKKEIVAALRKLND
EEECEEECCCEEEEECEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVQHLTAEEIIQYISDAKKSTPIKVYLNGNFEGITYPESFKVFGSEQSKVIFCEADDWKP
CCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCEEEECCCCCEEEEEECCCCCH
FYETYGSQFEDIEIEMDRRNSAIPLKDLTNTNARIEPGAFIREQAIIEDGAVVMMGATIN
HHHHHCCCCEEEEEEECCCCCCCCHHHCCCCCCEECCCCHHHHHHHHCCCCEEEEECEEE
IGAVVGEGTMIDMNATLGGRATTGKNVHVGAGAVLAGVIEPPSASPVIIEDDVLIGANAV
EEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEEEECCCCCCCEEEECCEEECCCEE
ILEGVRVGKGAIVAAGAIVTQDVPAGTVVAGTPAKVIKQASEVQDTKKEIVAALRKLND
EEECEEECCCEEEEECEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA