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The map label for this gene is ymfC [H]

Identifier: 82750878

GI number: 82750878

Start: 1238100

End: 1238813

Strand: Direct

Name: ymfC [H]

Synonym: SAB1139

Alternate gene names: 82750878

Gene position: 1238100-1238813 (Clockwise)

Preceding gene: 82750877

Following gene: 82750879

Centisome position: 45.14

GC content: 31.51

Gene sequence:

>714_bases
ATGTCAGAAATGAATGCGGTATATAACGTTAAACAATACATTTTAAATTTGATTAAGCAAAATAAATTGGAATATGGTGA
CCAACTTCCAAGTAATTTATCAATTGCCAGAGAATTAAATGTAAAAACCGACGATGTTTATGAAGCAACTCAGGCATTGA
TTACTGAACAAGTCATTAAAGATAATTTTGAAGAGGGCACAAGTGTTAAGTCACTGCCCCCTTTCTATTATCCATTGAAT
GAACTTATAAGTATTGGGCAAATGATTAAAAATGCAGGATTTGAATGCGGAACTGAATACTTAAATTTTGATGAGCAACC
AGCAACTATGTTAGATGCAAATTTGTTGAGCGTTGAAGAAGGATATCCAGTAACCATTATAGAACGATTACGAACTGCCG
ATGGAGAACCGGTCGTCTATTGTTTAGATAAAATTGCTAAAAAAGAATTAACATGTACAGAGTATCAAATGAGCAATGGA
TCGATACTAAGTGCGATAAAAGAACAAAGTAATCATAATATTTGTTATGCTGATACAGAAATTGAAGCGGTAAATTATGA
ACCTCGAATATCCGAAGTACTGAATGCTTCGCCACACGAAGGTTTGATTTTATTAAAAATTACGCACTATAATGAATCAG
ATGAACCTATTTTGTATTCATTAAATTATATGAAAAATAGCTTAGTTCAATTTAAAATCACTAGAAAAATATAG

Upstream 100 bases:

>100_bases
TTGATGGATGATTTAGAACGCAATCAGGTAATCGGTCCACAAAAAGGAAGCAAGCCTAGACAAGTTTTAATAGATCTTAA
TAATGACGAGGTGTAAAAAA

Downstream 100 bases:

>100_bases
ATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAAC
TAAATTTAAAACAACTACTA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSEMNAVYNVKQYILNLIKQNKLEYGDQLPSNLSIARELNVKTDDVYEATQALITEQVIKDNFEEGTSVKSLPPFYYPLN
ELISIGQMIKNAGFECGTEYLNFDEQPATMLDANLLSVEEGYPVTIIERLRTADGEPVVYCLDKIAKKELTCTEYQMSNG
SILSAIKEQSNHNICYADTEIEAVNYEPRISEVLNASPHEGLILLKITHYNESDEPILYSLNYMKNSLVQFKITRKI

Sequences:

>Translated_237_residues
MSEMNAVYNVKQYILNLIKQNKLEYGDQLPSNLSIARELNVKTDDVYEATQALITEQVIKDNFEEGTSVKSLPPFYYPLN
ELISIGQMIKNAGFECGTEYLNFDEQPATMLDANLLSVEEGYPVTIIERLRTADGEPVVYCLDKIAKKELTCTEYQMSNG
SILSAIKEQSNHNICYADTEIEAVNYEPRISEVLNASPHEGLILLKITHYNESDEPILYSLNYMKNSLVQFKITRKI
>Mature_236_residues
SEMNAVYNVKQYILNLIKQNKLEYGDQLPSNLSIARELNVKTDDVYEATQALITEQVIKDNFEEGTSVKSLPPFYYPLNE
LISIGQMIKNAGFECGTEYLNFDEQPATMLDANLLSVEEGYPVTIIERLRTADGEPVVYCLDKIAKKELTCTEYQMSNGS
ILSAIKEQSNHNICYADTEIEAVNYEPRISEVLNASPHEGLILLKITHYNESDEPILYSLNYMKNSLVQFKITRKI

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. By Similarity Could Be A Transcriptional Regulator. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26955; Mature: 26824

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEMNAVYNVKQYILNLIKQNKLEYGDQLPSNLSIARELNVKTDDVYEATQALITEQVIK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHH
DNFEEGTSVKSLPPFYYPLNELISIGQMIKNAGFECGTEYLNFDEQPATMLDANLLSVEE
CCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHEEECC
GYPVTIIERLRTADGEPVVYCLDKIAKKELTCTEYQMSNGSILSAIKEQSNHNICYADTE
CCCHHHHHHHHCCCCCEEHHHHHHHHHHCCCHHEEECCCCHHHHHHHHHCCCCEEEECCE
IEAVNYEPRISEVLNASPHEGLILLKITHYNESDEPILYSLNYMKNSLVQFKITRKI
EEEECCCCHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHCCEEEEEEECCC
>Mature Secondary Structure 
SEMNAVYNVKQYILNLIKQNKLEYGDQLPSNLSIARELNVKTDDVYEATQALITEQVIK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHH
DNFEEGTSVKSLPPFYYPLNELISIGQMIKNAGFECGTEYLNFDEQPATMLDANLLSVEE
CCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHEEECC
GYPVTIIERLRTADGEPVVYCLDKIAKKELTCTEYQMSNGSILSAIKEQSNHNICYADTE
CCCHHHHHHHHCCCCCEEHHHHHHHHHHCCCHHEEECCCCHHHHHHHHHCCCCEEEECCE
IEAVNYEPRISEVLNASPHEGLILLKITHYNESDEPILYSLNYMKNSLVQFKITRKI
EEEECCCCHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]