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The map label for this gene is xerC [H]

Identifier: 82750853

GI number: 82750853

Start: 1206170

End: 1207066

Strand: Direct

Name: xerC [H]

Synonym: SAB1114

Alternate gene names: 82750853

Gene position: 1206170-1207066 (Clockwise)

Preceding gene: 82750852

Following gene: 82750854

Centisome position: 43.98

GC content: 32.22

Gene sequence:

>897_bases
TTGAATCATATTCAAGAAGCGTTTTTAAATACATTGAAAGTTGAACGGAATTTTTCGGAACATACATTGAAATCATATCA
AGATGACTTAATTCAGTTTAATCAATTTTTAGAACAAGAACATTTACAGTTGAATACTTTTGAATACAGAGATGCTAGAA
ATTATTTGAGCTATTTATATTCAAATCATTTGAAAAGAACATCTGTTTCTCGTAAAATCTCAACGTTAAGAACTTTCTAT
GAATATTGGATGACGCTTGATGAGAACATTATTAATCCATTTGTTCAATTAGTACATCCGAAAAAAGAAAAATATCTTCC
GCAATTCTTTTACGAAGAAGAAATGGAAGCGTTATTTAAAACTGTAGAAGAGGACACTTCAAAAAGTTTACGGGATCGAG
TTATTCTTGAATTGTTATATGCTACAGGTATCCGTGTTTCGGAATTAGTTAATATTAAAAAACAAGATATAGATTTTTAC
GCGAATGGTGTTACCGTATTTGGAAAAGGGAGCAAAGAGCGCTTTGTACCGTTTGGTGCTTATTGTAGACAAAGCATCGA
AAATTATTTAGAACATTTCAAACCAATTCAGTCATGCAATCATGATTTTCTTATTGTAAATATGAAGGGTGAAGCAATCA
CTGAACGCGGTGTACGATATGTTTTAAATGATATTGTTAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTC
AGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTT
GTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTAAGAAAAGTGTATCTAAATGCACATCCTCGAGCGAAAA
AGGAGAATGAAACATGA

Upstream 100 bases:

>100_bases
TACAATTATTTAATTCTCAAAAGATTTAGAATTGATTATCAAATTACTGTAAGCCCTTTGCTGTATATGCTACAATTCTT
ATTGATGGAGGGTAAATGTA

Downstream 100 bases:

>100_bases
GTAATACAACATTACATGCAACAACAATTTATGCTGTAAGACATAATGGGAAAGCAGCTATGGCTGGAGATGGGCAAGTA
ACGCTTGGTCAACAAGTCAT

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNHIQEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKISTLRTFY
EYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFY
ANGVTVFGKGSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET

Sequences:

>Translated_298_residues
MNHIQEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKISTLRTFY
EYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFY
ANGVTVFGKGSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET
>Mature_298_residues
MNHIQEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKISTLRTFY
EYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFY
ANGVTVFGKGSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=291, Percent_Identity=38.4879725085911, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1790244, Length=292, Percent_Identity=35.958904109589, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1790768, Length=171, Percent_Identity=25.1461988304094, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35133; Mature: 35133

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHIQEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLY
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHH
TVEEDTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVFGKGSKERFVPFGA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCEEEEECCCCCCCCCHHH
YCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
HHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET
HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNHIQEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLY
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHH
TVEEDTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVFGKGSKERFVPFGA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCEEEEECCCCCCCCCHHH
YCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
HHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET
HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA