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The map label for this gene is rbgA

Identifier: 82750846

GI number: 82750846

Start: 1197005

End: 1197889

Strand: Direct

Name: rbgA

Synonym: SAB1107

Alternate gene names: 82750846

Gene position: 1197005-1197889 (Clockwise)

Preceding gene: 82750845

Following gene: 82750847

Centisome position: 43.65

GC content: 33.9

Gene sequence:

>885_bases
ATGGTTATTCAATGGTATCCAGGACATATGGCGAAAGCCAAAAGAGAAGTAAGCGAACAATTAAAAAAAGTAGATGTAGT
GTTTGAACTAGTAGATGCAAGAATTCCATATAGTTCAAGAAACCCTATGATAGATGAAGTTATTAACCAAAAACCACGTG
TTGTTATATTAAATAAAAAAGATATGTCTAATTTAAATGAGATGTCAAAATGGGAACAATTTTTTATTGATAAAGGGTAC
TATCCTGTATCAGTGGATGCTAAGCACGGTAAAAATTTAAAGAAAGTGGAAGCTGCAGCAATTAAGGCGACTGCTGAAAA
ATTTGAACGCGAAAAAGCGAAAGGACTTAAACCAAGAGCGATTAGAGCGATGATTGTTGGAATTCCAAATGTTGGTAAGT
CCACATTAATAAATAAACTGGCAAAGCGTAGTATCGCGCAGACTGGTAATAAACCAGGTGTGACCAAACAACAACAATGG
ATAAAAGTTGGTAATGCATTACAACTATTAGATACACCAGGGATTCTTTGGCCTAAATTTGAAGATGAAGAAGTCGGTAA
GAAGTTGAGTTTAACAGGTGCCATAAAAGATAGTATTGTGCACTTAGATGAAGTTGCCATCTATGGTCTGAACTTTTTAA
TTCAAAATGATTTAGCGCGCTTAAAAGCACATTATAAAATCGAAGTTCCTGAAGATGCAGAAATCATAGCGTGGTTTGAT
GCGATAGGGAAAAAACGTGGCTTAATTCGATGTGGTAATGAAATTGATTACGAAGCAGTCATTGAACTGATTATTTATGA
TATTCGAAATGCTAAAATAGGAAATTATTGTTTTGATATTTTTAAAGATATGACTGAGGAATTAGCAAATGACGCTAACA
ATTAA

Upstream 100 bases:

>100_bases
TGTTAAAATAAATATAGTTGAATTAATGAATTTGTTCTATAATTAACAGGTTATAGATTTTAATAATGAGAAAAGAATTG
ACGAAAGTAAGGTGAATTGA

Downstream 100 bases:

>100_bases
AGAAGTAACGCAGTTGATTAATGCGGTTAATACAATAGAAGAATTAGAAAATCATGAATGTTTTTTAGATGAGCGAAAAG
GTGTACAAAATGCCATAGCC

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGY
YPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQW
IKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKAHYKIEVPEDAEIIAWFD
AIGKKRGLIRCGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN

Sequences:

>Translated_294_residues
MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGY
YPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQW
IKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKAHYKIEVPEDAEIIAWFD
AIGKKRGLIRCGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN
>Mature_294_residues
MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGY
YPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQW
IKVGNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKAHYKIEVPEDAEIIAWFD
AIGKKRGLIRCGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=235, Percent_Identity=33.6170212765957, Blast_Score=133, Evalue=2e-31,
Organism=Homo sapiens, GI45643129, Length=289, Percent_Identity=26.643598615917, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI45643127, Length=289, Percent_Identity=26.643598615917, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI45593130, Length=289, Percent_Identity=26.643598615917, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI296317324, Length=300, Percent_Identity=25, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI9506611, Length=300, Percent_Identity=25, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193211047, Length=231, Percent_Identity=30.3030303030303, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17534827, Length=188, Percent_Identity=28.7234042553192, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI25143545, Length=288, Percent_Identity=25, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115535155, Length=288, Percent_Identity=25, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71982363, Length=187, Percent_Identity=28.8770053475936, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6323744, Length=229, Percent_Identity=28.82096069869, Blast_Score=80, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6320842, Length=169, Percent_Identity=31.9526627218935, Blast_Score=77, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6324381, Length=253, Percent_Identity=24.901185770751, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI85815858, Length=230, Percent_Identity=33.0434782608696, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI28572990, Length=184, Percent_Identity=28.804347826087, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 33326; Mature: 33326

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKK
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEECCC
DMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA
CHHHHHHHHHHHHHHHCCCCEEEEECHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKF
EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCC
EDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKAHYKIEVPEDAEIIAWFD
CHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHH
AIGKKRGLIRCGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN
HHCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKK
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEECCC
DMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA
CHHHHHHHHHHHHHHHCCCCEEEEECHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKF
EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCC
EDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKAHYKIEVPEDAEIIAWFD
CHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHH
AIGKKRGLIRCGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN
HHCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]