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The map label for this gene is rimM

Identifier: 82750843

GI number: 82750843

Start: 1191836

End: 1192339

Strand: Direct

Name: rimM

Synonym: SAB1103

Alternate gene names: 82750843

Gene position: 1191836-1192339 (Clockwise)

Preceding gene: 82750842

Following gene: 82750844

Centisome position: 43.46

GC content: 31.94

Gene sequence:

>504_bases
ATGAGAGTTGAAGTTGGTCAAATTGTTAACACACATGGTATTAAAGGTGAAATTAAAGTAAAATCCAATTCAGACTTTAC
AGACGTTCGTTTTCAACCCGGTCAAGTGCTGACAGTTGTGCATAACAATAACGACCTTGAATATACTGTTAAGTCACATA
GAGTGCATAAAGGGCTTCATATGCTCACATTTGAAGGTATTAATAATATTAATGATATTGAGCATTTAAAAGGGAGTTCT
ATTTATCAAGAGCGTGATCATGAAGATATCGTACTTGAGGAAAATGAATATTATTATTCAGATATTATAGGATGTACAGT
TTTTGATGATCAAGAAACACCAATAGGTCGTGTAATTAATATATTTGAAACAGGTGCGAATGATGTGTGGGTGATTAAAG
GATCTAAAGAATATTTGATTCCTTATATTGCTGATGTTGTAAAAGAAGTGGATGTTGAAAATAAAAAAATTATCATCACG
CCAATGGAAGGATTGTTGGATTAA

Upstream 100 bases:

>100_bases
GTAATATAGAACGTATTGGGTACCATAATGGTGCCCTTTTTCTTTGAATTATTTTCAATTAAAATAGAAGTGTTCAAAGC
ATAGAGTTGGAGGTAATAGA

Downstream 100 bases:

>100_bases
TGAAAATTGATTATTTAACTTTATTTCCTGAAATGTTTGATGGTGTTTTAAATCATTCAATTATGAAACGTGCCCAAGAA
AACAATAAATTACAAATCAA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSS
IYQERDHEDIVLEENEYYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIIT
PMEGLLD

Sequences:

>Translated_167_residues
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSS
IYQERDHEDIVLEENEYYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIIT
PMEGLLD
>Mature_167_residues
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSS
IYQERDHEDIVLEENEYYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIIT
PMEGLLD

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=163, Percent_Identity=26.9938650306748, Blast_Score=64, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19089; Mature: 19089

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLH
CEEECCCEEECCCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCEEEEEECCHHHCCEE
MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEYYYSDIIGCTVFDDQETPIGRVIN
EEEECCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCEEEEEEEEEEEECCCCCCHHHEEE
IFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
EEECCCCEEEEEECCCCEEHHHHHHHHHHCCCCCCEEEEECCHHHCC
>Mature Secondary Structure
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLH
CEEECCCEEECCCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCEEEEEECCHHHCCEE
MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEYYYSDIIGCTVFDDQETPIGRVIN
EEEECCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCEEEEEEEEEEEECCCCCCHHHEEE
IFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
EEECCCCEEEEEECCCCEEHHHHHHHHHHCCCCCCEEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA