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The map label for this gene is polX [H]

Identifier: 82750750

GI number: 82750750

Start: 1089074

End: 1090786

Strand: Direct

Name: polX [H]

Synonym: SAB1007

Alternate gene names: 82750750

Gene position: 1089074-1090786 (Clockwise)

Preceding gene: 82750749

Following gene: 82750751

Centisome position: 39.71

GC content: 32.11

Gene sequence:

>1713_bases
ATGACAAAAAAAGATGTTATCAAACTATTAGAACAAATTGCTACTTATATGGAATTAAAAGGGGAAAATACTTTTAAAAT
ATCAGCGTATCGAAAAGCAGCTCAAAGTCTTGAATTAGATGAACGACCATTAGATGAAATATCTGATGTAACGGAGTTAA
AAGGCATTGGTAAAGGTGTTGCAGAAGTAATCAATGATTACCGTGAGACCGGTGAATCTCAGTATTTACAACAATTACAG
GAAGAAGTTCCGGATGGTCTTATTCCACTTTTGAAAATTCAAGGACTTGGAAGCAAGAAAATTGCTAAGCTATATAAAGA
GTTGAATATTGTTGATAAAGCGTCACTTCAAGTTGCTTGTGAAAATGGAAAAGTTAGTGAATTAAGCGGATTTGCTAAGA
AAACGGAACAAAACATATTAGAAGCTGTGAAACAACTTGGTGCTAAGAAAGATAAATATCCAATTGATCAAATGAGAAGA
CTTAATCAAGAAATCATTGATTATATAGATACATTAAATTATATCGATCAATATTCATCTGCAGGAAGTTTCCGTCGTTT
TAAAGAAATGAGCAAAGATTTAGATTTCATAATAAGTACCGATAACCCAAAAGCAGTGCAGCAACAATTATTAAATATTC
CCAATAAAGTAAAAGAAGTTGCAGTGGGGAACACAAAAGTTTCATTAGAATTAGCGTATGATGATGAAACAATTGGTGTC
GATTTTCGATTAATTGAACCAAGTGCTTTTTATCATACATTGCAGCATTTTACTGGGTCAAAAGAACATAATATAAGAAT
TCGACAACTTGCTAAAGCACGTGATGAAAAAGTAAGTGAATATGGAATTGAACAAGCTGATGGTACATTAATTCAATATG
ATAGTGAAGCCAAAATATATGAACATTTTAATGTGAATTTTATACCACCTGCTATGCGAGAAGATGGTAGCGAATTTGAT
AAAGATCTAAGTAATATTATTACATTAGATGATATTAATGGAGATATTCATATGCATACAACGTATAGTGATGGTGCGTT
TTCCATTCGAGACATGGTAGAAGCAAATATCGCAAAAGGTTATAAATTCATGGTAATTACTGATCATTCACAAAGTTTAC
GTGTTGCTAATGGCTTACAAGTAGAAAGACTTTTAAGACAAAACGAAGAAATTAAAGCTTTAGATAAAGAATATAGTGAA
ATTGATATTTATTCAGGTACAGAAATGGATATATTACCTGATGGCTCACTGGATTATGATGATGAAATTTTAGCGCAACT
TGATTATGTAATTGGAGCTATTCATCAAAGCTTTAACCAATCAGAAGAACAAATTATGGAACGATTAGCTAATGCATGTC
GCAATCCATACGTGCGACATATAGCGCATCCAACAGGGCGTATTATAGGTAGAAGAGATGGTTATAAACCGAATATTGAA
CAATTAATGGCATTAGCTGAAGAAACGAATACAGTATTAGAAATTAATGCCAATCCACATCGACTGGATCTGAACGCTGA
TATCGTTCGTAAATATCCAAATGTGAAATTAACTATTAACACTGATGCGCATCATACAAATCATTTAGATTTTATGAATT
ATGGCGTAGCAACTGCGCAAAAAGGATTTGTAACAAAAGATAGAGTGATTAACGCATTATCGCGTGAAGCTTTCAAAGAC
TTTATTGAAAATAATATAAAACTTAAGAAATAG

Upstream 100 bases:

>100_bases
TTTATCGGCTTTCACCATTAATTTATAAATTATCATAAGAGGTCAGGACAAAGGTATATATTAATGATACGTCCTGGTCT
TCTTTTTATGGAGTGTTATT

Downstream 100 bases:

>100_bases
AGGGATTTTATGAGACAAAAAACATTAGACGTCTTAGAATTTGAAAAAATAAAATCACTCGTTGCCAATGAAACTATTAG
TGACTTAGGCTTGGAAAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: DNA polymerase type-X; 3'-5' exodeoxyribonuclease; 3'-5' exonuclease [H]

Number of amino acids: Translated: 570; Mature: 569

Protein sequence:

>570_residues
MTKKDVIKLLEQIATYMELKGENTFKISAYRKAAQSLELDERPLDEISDVTELKGIGKGVAEVINDYRETGESQYLQQLQ
EEVPDGLIPLLKIQGLGSKKIAKLYKELNIVDKASLQVACENGKVSELSGFAKKTEQNILEAVKQLGAKKDKYPIDQMRR
LNQEIIDYIDTLNYIDQYSSAGSFRRFKEMSKDLDFIISTDNPKAVQQQLLNIPNKVKEVAVGNTKVSLELAYDDETIGV
DFRLIEPSAFYHTLQHFTGSKEHNIRIRQLAKARDEKVSEYGIEQADGTLIQYDSEAKIYEHFNVNFIPPAMREDGSEFD
KDLSNIITLDDINGDIHMHTTYSDGAFSIRDMVEANIAKGYKFMVITDHSQSLRVANGLQVERLLRQNEEIKALDKEYSE
IDIYSGTEMDILPDGSLDYDDEILAQLDYVIGAIHQSFNQSEEQIMERLANACRNPYVRHIAHPTGRIIGRRDGYKPNIE
QLMALAEETNTVLEINANPHRLDLNADIVRKYPNVKLTINTDAHHTNHLDFMNYGVATAQKGFVTKDRVINALSREAFKD
FIENNIKLKK

Sequences:

>Translated_570_residues
MTKKDVIKLLEQIATYMELKGENTFKISAYRKAAQSLELDERPLDEISDVTELKGIGKGVAEVINDYRETGESQYLQQLQ
EEVPDGLIPLLKIQGLGSKKIAKLYKELNIVDKASLQVACENGKVSELSGFAKKTEQNILEAVKQLGAKKDKYPIDQMRR
LNQEIIDYIDTLNYIDQYSSAGSFRRFKEMSKDLDFIISTDNPKAVQQQLLNIPNKVKEVAVGNTKVSLELAYDDETIGV
DFRLIEPSAFYHTLQHFTGSKEHNIRIRQLAKARDEKVSEYGIEQADGTLIQYDSEAKIYEHFNVNFIPPAMREDGSEFD
KDLSNIITLDDINGDIHMHTTYSDGAFSIRDMVEANIAKGYKFMVITDHSQSLRVANGLQVERLLRQNEEIKALDKEYSE
IDIYSGTEMDILPDGSLDYDDEILAQLDYVIGAIHQSFNQSEEQIMERLANACRNPYVRHIAHPTGRIIGRRDGYKPNIE
QLMALAEETNTVLEINANPHRLDLNADIVRKYPNVKLTINTDAHHTNHLDFMNYGVATAQKGFVTKDRVINALSREAFKD
FIENNIKLKK
>Mature_569_residues
TKKDVIKLLEQIATYMELKGENTFKISAYRKAAQSLELDERPLDEISDVTELKGIGKGVAEVINDYRETGESQYLQQLQE
EVPDGLIPLLKIQGLGSKKIAKLYKELNIVDKASLQVACENGKVSELSGFAKKTEQNILEAVKQLGAKKDKYPIDQMRRL
NQEIIDYIDTLNYIDQYSSAGSFRRFKEMSKDLDFIISTDNPKAVQQQLLNIPNKVKEVAVGNTKVSLELAYDDETIGVD
FRLIEPSAFYHTLQHFTGSKEHNIRIRQLAKARDEKVSEYGIEQADGTLIQYDSEAKIYEHFNVNFIPPAMREDGSEFDK
DLSNIITLDDINGDIHMHTTYSDGAFSIRDMVEANIAKGYKFMVITDHSQSLRVANGLQVERLLRQNEEIKALDKEYSEI
DIYSGTEMDILPDGSLDYDDEILAQLDYVIGAIHQSFNQSEEQIMERLANACRNPYVRHIAHPTGRIIGRRDGYKPNIEQ
LMALAEETNTVLEINANPHRLDLNADIVRKYPNVKLTINTDAHHTNHLDFMNYGVATAQKGFVTKDRVINALSREAFKDF
IENNIKLKK

Specific function: Strictly DNA-template-directed DNA polymerase, preferentially acting on DNA structures containing gaps from one to a few nucleotides and bearing a phosphate group at the 5' end of the downstream DNA. The fact that PolX is able to conduct filling of a sing

COG id: COG1796

COG function: function code L; DNA polymerase IV (family X)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the PHP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002054
- InterPro:   IPR010996
- InterPro:   IPR003583
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195
- InterPro:   IPR022311 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 64868; Mature: 64737

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKDVIKLLEQIATYMELKGENTFKISAYRKAAQSLELDERPLDEISDVTELKGIGKGV
CCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHH
AEVINDYRETGESQYLQQLQEEVPDGLIPLLKIQGLGSKKIAKLYKELNIVDKASLQVAC
HHHHHHHHHCCHHHHHHHHHHHCCCCCEEHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEE
ENGKVSELSGFAKKTEQNILEAVKQLGAKKDKYPIDQMRRLNQEIIDYIDTLNYIDQYSS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
AGSFRRFKEMSKDLDFIISTDNPKAVQQQLLNIPNKVKEVAVGNTKVSLELAYDDETIGV
CCHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEECCCEECE
DFRLIEPSAFYHTLQHFTGSKEHNIRIRQLAKARDEKVSEYGIEQADGTLIQYDSEAKIY
EEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHH
EHFNVNFIPPAMREDGSEFDKDLSNIITLDDINGDIHMHTTYSDGAFSIRDMVEANIAKG
HCCCCEECCCHHHCCCHHHHHHHHHEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCC
YKFMVITDHSQSLRVANGLQVERLLRQNEEIKALDKEYSEIDIYSGTEMDILPDGSLDYD
EEEEEEECCCCCHHHHCCHHHHHHHHCCCHHHHHHHHHCEEEEECCCCEEECCCCCCCCC
DEILAQLDYVIGAIHQSFNQSEEQIMERLANACRNPYVRHIAHPTGRIIGRRDGYKPNIE
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHCCCCHHEECCCCCCCCCHH
QLMALAEETNTVLEINANPHRLDLNADIVRKYPNVKLTINTDAHHTNHLDFMNYGVATAQ
HHHHHHHCCCCEEEECCCCCEEECCHHHHHHCCCEEEEEECCCCCCCCCHHHHCCHHHHC
KGFVTKDRVINALSREAFKDFIENNIKLKK
CCCCCHHHHHHHHHHHHHHHHHHCCCEECC
>Mature Secondary Structure 
TKKDVIKLLEQIATYMELKGENTFKISAYRKAAQSLELDERPLDEISDVTELKGIGKGV
CHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHH
AEVINDYRETGESQYLQQLQEEVPDGLIPLLKIQGLGSKKIAKLYKELNIVDKASLQVAC
HHHHHHHHHCCHHHHHHHHHHHCCCCCEEHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEE
ENGKVSELSGFAKKTEQNILEAVKQLGAKKDKYPIDQMRRLNQEIIDYIDTLNYIDQYSS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
AGSFRRFKEMSKDLDFIISTDNPKAVQQQLLNIPNKVKEVAVGNTKVSLELAYDDETIGV
CCHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEECCCEECE
DFRLIEPSAFYHTLQHFTGSKEHNIRIRQLAKARDEKVSEYGIEQADGTLIQYDSEAKIY
EEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHH
EHFNVNFIPPAMREDGSEFDKDLSNIITLDDINGDIHMHTTYSDGAFSIRDMVEANIAKG
HCCCCEECCCHHHCCCHHHHHHHHHEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCC
YKFMVITDHSQSLRVANGLQVERLLRQNEEIKALDKEYSEIDIYSGTEMDILPDGSLDYD
EEEEEEECCCCCHHHHCCHHHHHHHHCCCHHHHHHHHHCEEEEECCCCEEECCCCCCCCC
DEILAQLDYVIGAIHQSFNQSEEQIMERLANACRNPYVRHIAHPTGRIIGRRDGYKPNIE
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHCCCCHHEECCCCCCCCCHH
QLMALAEETNTVLEINANPHRLDLNADIVRKYPNVKLTINTDAHHTNHLDFMNYGVATAQ
HHHHHHHCCCCEEEECCCCCEEECCHHHHHHCCCEEEEEECCCCCCCCCHHHHCCHHHHC
KGFVTKDRVINALSREAFKDFIENNIKLKK
CCCCCHHHHHHHHHHHHHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]