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The map label for this gene is potD-B [H]

Identifier: 82750711

GI number: 82750711

Start: 1048434

End: 1049507

Strand: Direct

Name: potD-B [H]

Synonym: SAB0968

Alternate gene names: 82750711

Gene position: 1048434-1049507 (Clockwise)

Preceding gene: 82750710

Following gene: 82750712

Centisome position: 38.23

GC content: 31.75

Gene sequence:

>1074_bases
ATGAAACGTTTTTTACAACTCATTATAGGTGCATTAGTTGTGGGTATGCTTTGTCTTACTTTAAGTCATTGGTTTAAATC
TAAAGAACAAGTGCATACAAATCAAAAAATTTACGTATACAATTGGGGCGAATATATTGATCCAGAGTTAATTAAGAAAT
TTGAAAAAGAAACTGGCATTCAAGTCGTTTATGAAACTTTCGATTCAAATGAAGCGATGGAAACCAAAATTCGCAATGGC
GGTACACATTATGATGTTGCTTTTCCTAGTGAATATACAGTTCAAAAATTGAAAAGAGATCATTTATTGTTACCAATAGA
TCATAATAAGGTACCTAATATTAAAAATTTGGATTCAGATTATATGAATATGTCATTTGATAAAGGCAATAAATACTCTT
TACCTTATTTCTTTGGAACTGTAGGTATTTTATATAATAAAGAAAAGTATCCAAATGAATCATTTGATAGTTGGAAGTCG
TTGTATAATCCTAAATTTAAAAACCAAATTTTACTAGTTGATGGTGCTAGAGAGATTATAGGCATGAGTTTGAATAAACT
TGGGTATAATCTTAATGACCGTAATTCGCACCATTTAAAAGAAGCAGAGCGAGATTTAACCAAACTAGCACCACAAGTAA
GAGGTGTCGTAGGTGATGAAATTACCATGATGCTTCAACAAAATGAAGGTAACATAGCGGTTGTTTGGAGTGGTGTTGCA
GCACCTCTAGTGCAAGAAGGGGATAAATATAACTATGTTATTCCTAAAGAAGGATCGAATTTATGGTTCGACAATATGGT
AATTCCAAAAACGGCACAAAATAAAGAGGGTGCATATAAATTTATGAATTTTTTATTAGATGCTAAAAATAACAAGCAAA
ATACAGAATTCGTAGGCTATGCAACGCCAAACAAGGCTGCTCGACAATTGTTGCCTAAAGAGGTTAAAGACGACCATCGT
TTCTATCCGACTAAGAAAGAGCAAGAACGCCTTGAAATTTATAAAGATTTAGGACCTGAAGTTTTAAGTGAATACAATGA
AAACTTTTTGAATTTCAAAATGTCATTAAAATAA

Upstream 100 bases:

>100_bases
CAACATTATTGTTTGCTGTTATTGTATTAGGAATACTAGGATATTATTTGATTCAATACGTGATAAATAAGAAAAAACTA
ATCAAGCGAGTTGTAAAATA

Downstream 100 bases:

>100_bases
AATCATAAATAGTAGTTATTTACTGTATATTTAGTTATAATAACGGGATAAGTACTATAAGGAGTTGTAACGAATGACTG
GAGAACAATTTACTCAAATT

Product: spermidine/putrescine-binding periplasmic protein precursor

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: SPBP [H]

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MKRFLQLIIGALVVGMLCLTLSHWFKSKEQVHTNQKIYVYNWGEYIDPELIKKFEKETGIQVVYETFDSNEAMETKIRNG
GTHYDVAFPSEYTVQKLKRDHLLLPIDHNKVPNIKNLDSDYMNMSFDKGNKYSLPYFFGTVGILYNKEKYPNESFDSWKS
LYNPKFKNQILLVDGAREIIGMSLNKLGYNLNDRNSHHLKEAERDLTKLAPQVRGVVGDEITMMLQQNEGNIAVVWSGVA
APLVQEGDKYNYVIPKEGSNLWFDNMVIPKTAQNKEGAYKFMNFLLDAKNNKQNTEFVGYATPNKAARQLLPKEVKDDHR
FYPTKKEQERLEIYKDLGPEVLSEYNENFLNFKMSLK

Sequences:

>Translated_357_residues
MKRFLQLIIGALVVGMLCLTLSHWFKSKEQVHTNQKIYVYNWGEYIDPELIKKFEKETGIQVVYETFDSNEAMETKIRNG
GTHYDVAFPSEYTVQKLKRDHLLLPIDHNKVPNIKNLDSDYMNMSFDKGNKYSLPYFFGTVGILYNKEKYPNESFDSWKS
LYNPKFKNQILLVDGAREIIGMSLNKLGYNLNDRNSHHLKEAERDLTKLAPQVRGVVGDEITMMLQQNEGNIAVVWSGVA
APLVQEGDKYNYVIPKEGSNLWFDNMVIPKTAQNKEGAYKFMNFLLDAKNNKQNTEFVGYATPNKAARQLLPKEVKDDHR
FYPTKKEQERLEIYKDLGPEVLSEYNENFLNFKMSLK
>Mature_357_residues
MKRFLQLIIGALVVGMLCLTLSHWFKSKEQVHTNQKIYVYNWGEYIDPELIKKFEKETGIQVVYETFDSNEAMETKIRNG
GTHYDVAFPSEYTVQKLKRDHLLLPIDHNKVPNIKNLDSDYMNMSFDKGNKYSLPYFFGTVGILYNKEKYPNESFDSWKS
LYNPKFKNQILLVDGAREIIGMSLNKLGYNLNDRNSHHLKEAERDLTKLAPQVRGVVGDEITMMLQQNEGNIAVVWSGVA
APLVQEGDKYNYVIPKEGSNLWFDNMVIPKTAQNKEGAYKFMNFLLDAKNNKQNTEFVGYATPNKAARQLLPKEVKDDHR
FYPTKKEQERLEIYKDLGPEVLSEYNENFLNFKMSLK

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine. Polyamine binding protein [H]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787367, Length=313, Percent_Identity=39.6166134185303, Blast_Score=239, Evalue=3e-64,
Organism=Escherichia coli, GI1787078, Length=352, Percent_Identity=31.8181818181818, Blast_Score=172, Evalue=3e-44,

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 41474; Mature: 41474

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFLQLIIGALVVGMLCLTLSHWFKSKEQVHTNQKIYVYNWGEYIDPELIKKFEKETGI
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCC
QVVYETFDSNEAMETKIRNGGTHYDVAFPSEYTVQKLKRDHLLLPIDHNKVPNIKNLDSD
EEEEEECCCCHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCH
YMNMSFDKGNKYSLPYFFGTVGILYNKEKYPNESFDSWKSLYNPKFKNQILLVDGAREII
HHCCEECCCCCEECCHHHHHHHHEECCCCCCCCCHHHHHHHCCCCCCCEEEEEECCHHHH
GMSLNKLGYNLNDRNSHHLKEAERDLTKLAPQVRGVVGDEITMMLQQNEGNIAVVWSGVA
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCCH
APLVQEGDKYNYVIPKEGSNLWFDNMVIPKTAQNKEGAYKFMNFLLDAKNNKQNTEFVGY
HHHHHCCCCCEEEECCCCCCEEECCEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
ATPNKAARQLLPKEVKDDHRFYPTKKEQERLEIYKDLGPEVLSEYNENFLNFKMSLK
ECCCHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCEEEEEECC
>Mature Secondary Structure
MKRFLQLIIGALVVGMLCLTLSHWFKSKEQVHTNQKIYVYNWGEYIDPELIKKFEKETGI
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCC
QVVYETFDSNEAMETKIRNGGTHYDVAFPSEYTVQKLKRDHLLLPIDHNKVPNIKNLDSD
EEEEEECCCCHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCH
YMNMSFDKGNKYSLPYFFGTVGILYNKEKYPNESFDSWKSLYNPKFKNQILLVDGAREII
HHCCEECCCCCEECCHHHHHHHHEECCCCCCCCCHHHHHHHCCCCCCCEEEEEECCHHHH
GMSLNKLGYNLNDRNSHHLKEAERDLTKLAPQVRGVVGDEITMMLQQNEGNIAVVWSGVA
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCCH
APLVQEGDKYNYVIPKEGSNLWFDNMVIPKTAQNKEGAYKFMNFLLDAKNNKQNTEFVGY
HHHHHCCCCCEEEECCCCCCEEECCEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
ATPNKAARQLLPKEVKDDHRFYPTKKEQERLEIYKDLGPEVLSEYNENFLNFKMSLK
ECCCHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]