Click here to switch to the map view.

The map label for this gene is yfmC [H]

Identifier: 82750650

GI number: 82750650

Start: 981584

End: 982234

Strand: Direct

Name: yfmC [H]

Synonym: SAB0905

Alternate gene names: 82750650

Gene position: 981584-982234 (Clockwise)

Preceding gene: 82750649

Following gene: 82750652

Centisome position: 35.79

GC content: 33.18

Gene sequence:

>651_bases
ATGGAAGTGATAAGTAAATTAAAACCGGATTTGATCATTGCAGATGTTAACAGACATAAGAAAATCAAATCAGAATTGAG
CAAAATTGCTCCGACAATCATGTTAGTTAGCGGTACGGGAGATTATAATGCAAATATTGAAGCATTTAAAACAGTTGCTA
AAGCAGTAGGCAAAGAGAAAGAAGGCGAGAAACGTCTGGAAAAGCATGATAAAATATTAGCGGAGATTAGAAAGAAAATT
GAACAGAGTACGTTAAAATCTGCATTTGCATTCGGTATCTCAAGAGCAGGTATGTTTATTAATAATGAAGATACATTTAT
GGGACAATTCTTAATTAAAATGGGTATTCAACCTGAAGTCACAAAAGACAAAACTATGCATGTTGGTGAACGCAAGGGTG
GTCCTTATATTTATTTAAATAATGAAGAACTTGCCAATATCAATCCAAAAGTTATGATTTTAGCCACTGACGGAAAAACG
GACAAAAATAGAACGAAATTCATTGATCCTGCAGTTTGGAAATCATTAAAAGCTGTGAAAGATAACAAAGTTTATGACGT
TGACCGAAATAAGTGGTTGAAATCAAGGGGTATTATCGCAAGTGAAAGTATGGCAGAAGATTTAGAAAAAATTGCAGAAA
AAGCAAAATAA

Upstream 100 bases:

>100_bases
AACCTGTTGGTATTGCAGATGATGGCAGCAGTAAAAATATAACAAAGTCAGTAAGAGATAAGATTGGGGCATATGAATCA
GTTGGATCTAGACCGCAAAT

Downstream 100 bases:

>100_bases
AAATACAGCGCCACTCGTAAATGATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATT
TACCTGAAAGTTTATTTCGA

Product: iron transport protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: Ferric-citrate-binding protein [H]

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MEVISKLKPDLIIADVNRHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVGKEKEGEKRLEKHDKILAEIRKKI
EQSTLKSAFAFGISRAGMFINNEDTFMGQFLIKMGIQPEVTKDKTMHVGERKGGPYIYLNNEELANINPKVMILATDGKT
DKNRTKFIDPAVWKSLKAVKDNKVYDVDRNKWLKSRGIIASESMAEDLEKIAEKAK

Sequences:

>Translated_216_residues
MEVISKLKPDLIIADVNRHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVGKEKEGEKRLEKHDKILAEIRKKI
EQSTLKSAFAFGISRAGMFINNEDTFMGQFLIKMGIQPEVTKDKTMHVGERKGGPYIYLNNEELANINPKVMILATDGKT
DKNRTKFIDPAVWKSLKAVKDNKVYDVDRNKWLKSRGIIASESMAEDLEKIAEKAK
>Mature_216_residues
MEVISKLKPDLIIADVNRHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVGKEKEGEKRLEKHDKILAEIRKKI
EQSTLKSAFAFGISRAGMFINNEDTFMGQFLIKMGIQPEVTKDKTMHVGERKGGPYIYLNNEELANINPKVMILATDGKT
DKNRTKFIDPAVWKSLKAVKDNKVYDVDRNKWLKSRGIIASESMAEDLEKIAEKAK

Specific function: Part of the ABC transporter complex yfmCDEF involved in citrate-dependent Fe(3+) import. Binds citrate-dependent Fe(3+) and delivers it to the surface of yfmDE (Probable) [H]

COG id: COG4594

COG function: function code P; ABC-type Fe3+-citrate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082411, Length=213, Percent_Identity=32.8638497652582, Blast_Score=111, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 24311; Mature: 24311

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVISKLKPDLIIADVNRHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVGKEK
CCCHHHCCCCEEEECCHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC
EGEKRLEKHDKILAEIRKKIEQSTLKSAFAFGISRAGMFINNEDTFMGQFLIKMGIQPEV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHCCCCCC
TKDKTMHVGERKGGPYIYLNNEELANINPKVMILATDGKTDKNRTKFIDPAVWKSLKAVK
CCCCCEECCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCHHCCCHHHHHHHHHHC
DNKVYDVDRNKWLKSRGIIASESMAEDLEKIAEKAK
CCCEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEVISKLKPDLIIADVNRHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVGKEK
CCCHHHCCCCEEEECCHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC
EGEKRLEKHDKILAEIRKKIEQSTLKSAFAFGISRAGMFINNEDTFMGQFLIKMGIQPEV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHCCCCCC
TKDKTMHVGERKGGPYIYLNNEELANINPKVMILATDGKTDKNRTKFIDPAVWKSLKAVK
CCCCCEECCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCHHCCCHHHHHHHHHHC
DNKVYDVDRNKWLKSRGIIASESMAEDLEKIAEKAK
CCCEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]