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The map label for this gene is yrbD [H]

Identifier: 82750625

GI number: 82750625

Start: 953217

End: 954785

Strand: Direct

Name: yrbD [H]

Synonym: SAB0879

Alternate gene names: 82750625

Gene position: 953217-954785 (Clockwise)

Preceding gene: 82750623

Following gene: 82750626

Centisome position: 34.76

GC content: 35.95

Gene sequence:

>1569_bases
ATGATTGAAAAATTAGTAACCTTTTTAAATGAGGTTGTTTGGAGTAAGCCATTAGTTTATGGTTTGCTAATTACTGGTGT
GCTATTTACATTGCGTATGCGATTTTTTCAAGTTAGACATTTTAAAGAAATGATTCGATTAATGTTTCAAGGAGAGAAGT
CTCCTAATGGTATTTCAAGTTTTCAAGCGATAGCCATGTCTTTAGCAGGCAGGGTTGGTACAGGTAATATTGTCGGTGTA
TCTACTGCAATATTTATAGGAGGACCTGGTGCAGTATTTTGGATGTGGATTACTGCGTTTTTAGGTGCAAGTAGTGCTTT
TATTGAATCTACACTTGGTCAAATATTCAAGAGAGTTGAAAATAATGAATACCGTGGTGGACCAGCGTATTATATTGAAT
ATGGTATTGGTGGTAAATTTGGTAAAATTTACGGAATTATCTTTGCTATTGTTACGATTATCTCAGTAGGTCTGTTGCTT
CCTGGTGTGCAATCTAACGCTATAGCAAGTTCTATGCATAATGCGATTCATGTTCCACAATGGTTAATGGGTGGTATTGT
TGTAGTTATTTTGGGATTAATTATTTTTGGTGGTGTACGTAGTATTGCCAATGTTGCAACAGCCGTTGTACCATTTATGG
CAATTATTTACATACTAATGGCTGTCATTATCATTTGTATCAATATACAAGAAGTGCCAGCGTTATTTGCATTAATTTTC
AAATCAGCATTTGGATTACAATCTGCTTTTGGTGGTATCGTTGGCGCAATGATAGAGATTGGTGTTAAACGTGGATTATA
CTCAAATGAGGCTGGTCAAGGTACAGGTCCACACGCAGCAGCGGCAGCAGAAGTATCACATCCAAGTAAACAAGGTCTAG
TACAAGCATTTTCAGTTTATATTGATACATTATTTGTATGTACTGCAACTGCTCTGATTATACTTATTTCTGGTACATAT
AATGTGACTGATGGTACGGTTAATGCGAATGGCACACCGCATTTAATTAAAGATGGCGGGATTTATGTTGAAAATGCAGC
AGGTAAAGATTATTCAGGTACTGCGATGTATGCACAAGCCGGCATTGATAAAGCGTTCCATGGCAGTGGTTATCAATTTG
ATCCTACTTTCTCTGGCGTAGGTTCGTACTTTATTGCATTTGCTTTATTCTTCTTTGCATTTACTACAATTTTGTCGTAC
TACTACATTACAGAAACAAATGTTGCTTATTTAACGCGTAATCAAAATAATCAAGTTTCATCGGTATTTATTAATATTGC
TCGTGTGATTATTTTGTTCGCTACATTTTACGGTGCAGTTAAAACAGCTGATGTAGCATGGGCATTCGGTGATTTAGGTG
TAGGTCTAATGGCTTGGTTAAATATCATTGCGATTTGGATTTTACATAAGCCTGCCGTAAATGCTTTAAAAGATTATGAA
ATTCAAAAGAAACGTTTAGGTAACGGTTATAATGCAGTTTATCAACCTGATCCGAATAAATTACCTAATGCTGTCTTTTG
GTTGAAGACATATCCAGAACGTTTAAAACAAGCACGTGCCAAAAAGTAG

Upstream 100 bases:

>100_bases
TGATCATATTATTATTTATAAGAATATTCTGAAAAATATATTGAAGTGTCTCGTGCTTAATCGTATAATATTTTTATGTT
TAAACAATAGGGGGAATCTT

Downstream 100 bases:

>100_bases
TCAACTTTTAGTTATGGTATATATAGTAATCATTTAATAAAAAAGAAAAAGTATTGAGAATTTTAGGTGCTCAGAAATTT
GAATTTTAAAATATAGTGTC

Product: sodium/alanine symporter family protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 522; Mature: 522

Protein sequence:

>522_residues
MIEKLVTFLNEVVWSKPLVYGLLITGVLFTLRMRFFQVRHFKEMIRLMFQGEKSPNGISSFQAIAMSLAGRVGTGNIVGV
STAIFIGGPGAVFWMWITAFLGASSAFIESTLGQIFKRVENNEYRGGPAYYIEYGIGGKFGKIYGIIFAIVTIISVGLLL
PGVQSNAIASSMHNAIHVPQWLMGGIVVVILGLIIFGGVRSIANVATAVVPFMAIIYILMAVIIICINIQEVPALFALIF
KSAFGLQSAFGGIVGAMIEIGVKRGLYSNEAGQGTGPHAAAAAEVSHPSKQGLVQAFSVYIDTLFVCTATALIILISGTY
NVTDGTVNANGTPHLIKDGGIYVENAAGKDYSGTAMYAQAGIDKAFHGSGYQFDPTFSGVGSYFIAFALFFFAFTTILSY
YYITETNVAYLTRNQNNQVSSVFINIARVIILFATFYGAVKTADVAWAFGDLGVGLMAWLNIIAIWILHKPAVNALKDYE
IQKKRLGNGYNAVYQPDPNKLPNAVFWLKTYPERLKQARAKK

Sequences:

>Translated_522_residues
MIEKLVTFLNEVVWSKPLVYGLLITGVLFTLRMRFFQVRHFKEMIRLMFQGEKSPNGISSFQAIAMSLAGRVGTGNIVGV
STAIFIGGPGAVFWMWITAFLGASSAFIESTLGQIFKRVENNEYRGGPAYYIEYGIGGKFGKIYGIIFAIVTIISVGLLL
PGVQSNAIASSMHNAIHVPQWLMGGIVVVILGLIIFGGVRSIANVATAVVPFMAIIYILMAVIIICINIQEVPALFALIF
KSAFGLQSAFGGIVGAMIEIGVKRGLYSNEAGQGTGPHAAAAAEVSHPSKQGLVQAFSVYIDTLFVCTATALIILISGTY
NVTDGTVNANGTPHLIKDGGIYVENAAGKDYSGTAMYAQAGIDKAFHGSGYQFDPTFSGVGSYFIAFALFFFAFTTILSY
YYITETNVAYLTRNQNNQVSSVFINIARVIILFATFYGAVKTADVAWAFGDLGVGLMAWLNIIAIWILHKPAVNALKDYE
IQKKRLGNGYNAVYQPDPNKLPNAVFWLKTYPERLKQARAKK
>Mature_522_residues
MIEKLVTFLNEVVWSKPLVYGLLITGVLFTLRMRFFQVRHFKEMIRLMFQGEKSPNGISSFQAIAMSLAGRVGTGNIVGV
STAIFIGGPGAVFWMWITAFLGASSAFIESTLGQIFKRVENNEYRGGPAYYIEYGIGGKFGKIYGIIFAIVTIISVGLLL
PGVQSNAIASSMHNAIHVPQWLMGGIVVVILGLIIFGGVRSIANVATAVVPFMAIIYILMAVIIICINIQEVPALFALIF
KSAFGLQSAFGGIVGAMIEIGVKRGLYSNEAGQGTGPHAAAAAEVSHPSKQGLVQAFSVYIDTLFVCTATALIILISGTY
NVTDGTVNANGTPHLIKDGGIYVENAAGKDYSGTAMYAQAGIDKAFHGSGYQFDPTFSGVGSYFIAFALFFFAFTTILSY
YYITETNVAYLTRNQNNQVSSVFINIARVIILFATFYGAVKTADVAWAFGDLGVGLMAWLNIIAIWILHKPAVNALKDYE
IQKKRLGNGYNAVYQPDPNKLPNAVFWLKTYPERLKQARAKK

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=505, Percent_Identity=32.6732673267327, Blast_Score=249, Evalue=2e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 56589; Mature: 56589

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEKLVTFLNEVVWSKPLVYGLLITGVLFTLRMRFFQVRHFKEMIRLMFQGEKSPNGISS
CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
FQAIAMSLAGRVGTGNIVGVSTAIFIGGPGAVFWMWITAFLGASSAFIESTLGQIFKRVE
HHHHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
NNEYRGGPAYYIEYGIGGKFGKIYGIIFAIVTIISVGLLLPGVQSNAIASSMHNAIHVPQ
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHH
WLMGGIVVVILGLIIFGGVRSIANVATAVVPFMAIIYILMAVIIICINIQEVPALFALIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
KSAFGLQSAFGGIVGAMIEIGVKRGLYSNEAGQGTGPHAAAAAEVSHPSKQGLVQAFSVY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH
IDTLFVCTATALIILISGTYNVTDGTVNANGTPHLIKDGGIYVENAAGKDYSGTAMYAQA
HHHHHHHHHHHHHHHEECCCCCCCCEECCCCCCCEEECCCEEEECCCCCCCCCCCHHHHH
GIDKAFHGSGYQFDPTFSGVGSYFIAFALFFFAFTTILSYYYITETNVAYLTRNQNNQVS
CCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCHHH
SVFINIARVIILFATFYGAVKTADVAWAFGDLGVGLMAWLNIIAIWILHKPAVNALKDYE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
IQKKRLGNGYNAVYQPDPNKLPNAVFWLKTYPERLKQARAKK
HHHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIEKLVTFLNEVVWSKPLVYGLLITGVLFTLRMRFFQVRHFKEMIRLMFQGEKSPNGISS
CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
FQAIAMSLAGRVGTGNIVGVSTAIFIGGPGAVFWMWITAFLGASSAFIESTLGQIFKRVE
HHHHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
NNEYRGGPAYYIEYGIGGKFGKIYGIIFAIVTIISVGLLLPGVQSNAIASSMHNAIHVPQ
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHH
WLMGGIVVVILGLIIFGGVRSIANVATAVVPFMAIIYILMAVIIICINIQEVPALFALIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
KSAFGLQSAFGGIVGAMIEIGVKRGLYSNEAGQGTGPHAAAAAEVSHPSKQGLVQAFSVY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH
IDTLFVCTATALIILISGTYNVTDGTVNANGTPHLIKDGGIYVENAAGKDYSGTAMYAQA
HHHHHHHHHHHHHHHEECCCCCCCCEECCCCCCCEEECCCEEEECCCCCCCCCCCHHHHH
GIDKAFHGSGYQFDPTFSGVGSYFIAFALFFFAFTTILSYYYITETNVAYLTRNQNNQVS
CCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCHHH
SVFINIARVIILFATFYGAVKTADVAWAFGDLGVGLMAWLNIIAIWILHKPAVNALKDYE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
IQKKRLGNGYNAVYQPDPNKLPNAVFWLKTYPERLKQARAKK
HHHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]