Click here to switch to the map view.

The map label for this gene is oppA [H]

Identifier: 82750608

GI number: 82750608

Start: 934603

End: 935457

Strand: Direct

Name: oppA [H]

Synonym: SAB0861

Alternate gene names: 82750608

Gene position: 934603-935457 (Clockwise)

Preceding gene: 82750607

Following gene: 161777621

Centisome position: 34.08

GC content: 28.65

Gene sequence:

>855_bases
ATGAAAATTTCAAAATTAAAGTACTTATTATTAAATTTTATTTTTATATTGATACTCTCTGGTTGTAGTAAAGAAGGTAT
ATATTCTGATAAAGGACAAGTTTTCAGGAAAGTAATACCACAAGATATGAGTACTTTAGATACAACTTTAATAACAGATG
CAGTTTCAGGTGATATATCAAATCAAGTATTCGAAGGACTTTTTACACTAGATAAAAATGATAAAGCGAAATTAGCGATA
GCCAAAGAACTACCTAAAAAAAGTAATGGTGGTAAAACTTTAACTTTTAAATTAAGAAAAGACGCTAAATGGTCTAACGG
AGATCCAGTAACAGCGTATGATTTTGTATATGCGTGGAGAAAATTAGTTGATCCAAAAACAGGATCTGAATATGCTTACA
TAATGTCTGACATTGAAAATGCGGATAGTATAAATTCTGGTAAATTACCAGTTGAAAAGTTAGGTATTAAAGCATTAAGT
AAATATGAACTTGAAATAAAGTTGAAAAGACCTATACCATACATAAATGAATTGTTAGCTTTAAGTAATTTTTATCCACA
AAACGAAAAAGTTGCGAAAAAGTATGGAGAAAAGTACGGTTTGAAACCTCAAAATGCAGTTTATAATGGGCCGTTTAAGG
TTGATACTTGGAGAGCAGAAGATAAGATACTTTTGTCTAAGAATAATTTCTATTGGGATAAAAAGAACGTAAAATTAGAT
AAAGTTAATTATAAAATATTGAAGGATAAACAAGCTGGTGCTTCATTATTTGAAACAGGATCTGTTGATGATACATTAAT
TTTAGCCGATCAAGTAAAAAATATGAGAATTCTAGTGCTTTACAAAAGCGTATAA

Upstream 100 bases:

>100_bases
GGAATAGAAAAAGATCATTTTGTGTTCACAAGTATAAATAAGGCAGAACTATTGAGACAACGAAAACTTTAATGCTTTTA
GAAAGGGGGAAAACTAAATT

Downstream 100 bases:

>100_bases
CTTCAGGTAATTTTTTCATAAAATTTAATCAAAAAAAGGTCGAAGAATTTAAAAATCAAGATTTACGCATGGCAATAGCA
TTAGCAATCGATAAAAAAGG

Product: oligopeptide ATP-binding protein

Products: NA

Alternate protein names: Stage 0 sporulation protein KA [H]

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MKISKLKYLLLNFIFILILSGCSKEGIYSDKGQVFRKVIPQDMSTLDTTLITDAVSGDISNQVFEGLFTLDKNDKAKLAI
AKELPKKSNGGKTLTFKLRKDAKWSNGDPVTAYDFVYAWRKLVDPKTGSEYAYIMSDIENADSINSGKLPVEKLGIKALS
KYELEIKLKRPIPYINELLALSNFYPQNEKVAKKYGEKYGLKPQNAVYNGPFKVDTWRAEDKILLSKNNFYWDKKNVKLD
KVNYKILKDKQAGASLFETGSVDDTLILADQVKNMRILVLYKSV

Sequences:

>Translated_284_residues
MKISKLKYLLLNFIFILILSGCSKEGIYSDKGQVFRKVIPQDMSTLDTTLITDAVSGDISNQVFEGLFTLDKNDKAKLAI
AKELPKKSNGGKTLTFKLRKDAKWSNGDPVTAYDFVYAWRKLVDPKTGSEYAYIMSDIENADSINSGKLPVEKLGIKALS
KYELEIKLKRPIPYINELLALSNFYPQNEKVAKKYGEKYGLKPQNAVYNGPFKVDTWRAEDKILLSKNNFYWDKKNVKLD
KVNYKILKDKQAGASLFETGSVDDTLILADQVKNMRILVLYKSV
>Mature_284_residues
MKISKLKYLLLNFIFILILSGCSKEGIYSDKGQVFRKVIPQDMSTLDTTLITDAVSGDISNQVFEGLFTLDKNDKAKLAI
AKELPKKSNGGKTLTFKLRKDAKWSNGDPVTAYDFVYAWRKLVDPKTGSEYAYIMSDIENADSINSGKLPVEKLGIKALS
KYELEIKLKRPIPYINELLALSNFYPQNEKVAKKYGEKYGLKPQNAVYNGPFKVDTWRAEDKILLSKNNFYWDKKNVKLD
KVNYKILKDKQAGASLFETGSVDDTLILADQVKNMRILVLYKSV

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, It binds peptides up to five amino acids long with high affinity. Also required for sporulation and competence [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789397, Length=242, Percent_Identity=36.3636363636364, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI1787495, Length=226, Percent_Identity=34.5132743362832, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI87081878, Length=259, Percent_Identity=30.5019305019305, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1787052, Length=219, Percent_Identity=25.5707762557078, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 32225; Mature: 32225

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISKLKYLLLNFIFILILSGCSKEGIYSDKGQVFRKVIPQDMSTLDTTLITDAVSGDIS
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
NQVFEGLFTLDKNDKAKLAIAKELPKKSNGGKTLTFKLRKDAKWSNGDPVTAYDFVYAWR
HHHHHHHHEECCCCCCEEEEHHHCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH
KLVDPKTGSEYAYIMSDIENADSINSGKLPVEKLGIKALSKYELEIKLKRPIPYINELLA
HHCCCCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHEEEEEEEEEECCCHHHHHHHH
LSNFYPQNEKVAKKYGEKYGLKPQNAVYNGPFKVDTWRAEDKILLSKNNFYWDKKNVKLD
HHHCCCCCHHHHHHHHHHCCCCCCCCEECCCEEEEEECCCCEEEEECCCEEECCCCCEEE
KVNYKILKDKQAGASLFETGSVDDTLILADQVKNMRILVLYKSV
ECCEEEEECCCCCCHHEECCCCCCEEEEECCCCCEEEEEEEECC
>Mature Secondary Structure
MKISKLKYLLLNFIFILILSGCSKEGIYSDKGQVFRKVIPQDMSTLDTTLITDAVSGDIS
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
NQVFEGLFTLDKNDKAKLAIAKELPKKSNGGKTLTFKLRKDAKWSNGDPVTAYDFVYAWR
HHHHHHHHEECCCCCCEEEEHHHCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH
KLVDPKTGSEYAYIMSDIENADSINSGKLPVEKLGIKALSKYELEIKLKRPIPYINELLA
HHCCCCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHEEEEEEEEEECCCHHHHHHHH
LSNFYPQNEKVAKKYGEKYGLKPQNAVYNGPFKVDTWRAEDKILLSKNNFYWDKKNVKLD
HHHCCCCCHHHHHHHHHHCCCCCCCCEECCCEEEEEECCCCEEEEECCCEEECCCCCEEE
KVNYKILKDKQAGASLFETGSVDDTLILADQVKNMRILVLYKSV
ECCEEEEECCCCCCHHEECCCCCCEEEEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]