| Definition | Staphylococcus aureus RF122, complete genome. |
|---|---|
| Accession | NC_007622 |
| Length | 2,742,531 |
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The map label for this gene is pgk
Identifier: 82750481
GI number: 82750481
Start: 801747
End: 802937
Strand: Direct
Name: pgk
Synonym: SAB0729
Alternate gene names: 82750481
Gene position: 801747-802937 (Clockwise)
Preceding gene: 82750480
Following gene: 82750482
Centisome position: 29.23
GC content: 34.34
Gene sequence:
>1191_bases ATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCATAGTACGTGCTGATTTTAACGTACCTTTAAA AGACGGTGAAATTACTAATGACAACCGTATCGTTCAAGCTTTACCTACAATTCAATACATCATCGAACAAGGTGGTAAAA TCGTACTATTTTCACATTTAGGTAAAGTAAAAGAAGAAAGTGATAAAGCAAAATTAACTTTACGTCCAGTTGCTGAAGAC TTATCTAAGAAATTAGATAAAGAAGTTGTTTTCGTACCGGAAACACGCGGCGAAAAACTTGAAGCAGCTATTAAAGATCT TAAAGAAGGCGACGTATTATTAGTTGAAAATACACGTTATGAAGATTTAGACGGTAAAAAAGAATCTAAAAATGATCCAG AATTAGGTAAATACTGGGCATCTTTAGGTGATGTGTTTGTAAATGATGCTTTTGGTACTGCGCATCGTGAGCATGCATCT AATGTTGGTATTTCTACACATTTAGAAACTGCAGCTGGATTCTTAATGGATAAAGAAATTAAGTTTATCGGTGGCGTAGT TAACGATCCACATAAACCAGTTGTTGCTATTTTAGGTGGAGCAAAAGTATCTGACAAAATTAATGTCATCAAAAACTTAG TTAACATTGCCGATAAAATTATCATCGGCGGAGGTATGGCTTATACTTTCTTAAAAGCTCAAGGTAAAGAAATTGGTATT TCATTATTAGAAGAAGATAAAATCGACTTCGCAAAAGATTTATTAGAAAAACATGGTGATAAAATTGTATTACCAGTAGA CACTAAAGTTGCTAAAGAATTTTCTAATGATGCCAAAATTACTGTAGTACCATCTGATTCAATTCCAGCAGACCAAGAAG GTATGGATATTGGACCAAACACTGTAAAATTATTTGCAGATGAATTAGAAGGTGCGCACACTGTTGTATGGAATGGACCT ATGGGTGTATTCGAGTTCAGTAACTTTGCACAAGGTACAATTGGTGTATGTAAAGCAATTGCAAACCTTAAAGATGCAAT TACGATTATCGGTGGCGGTGATTCAGCTGCAGCAGCAATCTCTTTAGGTTTTGAAAATGATTTCACTCATATTTCAACTG GTGGCGGAGCGTCATTAGAGTACCTAGAAGGTAAAGAATTGCCTGGTATCAAAGCAATCAATAATAAATAA
Upstream 100 bases:
>100_bases AACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCT AATTACAAGGAGGAAACACC
Downstream 100 bases:
>100_bases TAAAGTGATAGTTTAAAGTGATGTGGCATGTTTGTTTAACATTGTTACGGGAAAACAGTCACAAGATGACATCGTGTTTC ATCACTTTTTAAAAATATTT
Product: phosphoglycerate kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 396; Mature: 395
Protein sequence:
>396_residues MAKKIVSDLDLKGKTVIVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAED LSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHAS NVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGI SLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGP MGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK
Sequences:
>Translated_396_residues MAKKIVSDLDLKGKTVIVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAED LSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHAS NVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGI SLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGP MGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK >Mature_395_residues AKKIVSDLDLKGKTVIVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDL SKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASN VGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGIS LLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPM GVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK
Specific function: Second phase of glycolysis; second step. [C]
COG id: COG0126
COG function: function code G; 3-phosphoglycerate kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate kinase family [H]
Homologues:
Organism=Homo sapiens, GI4505763, Length=415, Percent_Identity=43.6144578313253, Blast_Score=320, Evalue=2e-87, Organism=Homo sapiens, GI31543397, Length=415, Percent_Identity=42.8915662650602, Blast_Score=310, Evalue=1e-84, Organism=Escherichia coli, GI1789294, Length=392, Percent_Identity=43.8775510204082, Blast_Score=303, Evalue=1e-83, Organism=Caenorhabditis elegans, GI17508823, Length=413, Percent_Identity=46.9733656174334, Blast_Score=344, Evalue=4e-95, Organism=Saccharomyces cerevisiae, GI6319857, Length=413, Percent_Identity=46.0048426150121, Blast_Score=325, Evalue=9e-90, Organism=Drosophila melanogaster, GI24581203, Length=410, Percent_Identity=43.1707317073171, Blast_Score=304, Evalue=6e-83, Organism=Drosophila melanogaster, GI17136394, Length=409, Percent_Identity=43.2762836185819, Blast_Score=301, Evalue=5e-82,
Paralogues:
None
Copy number: 2990 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1460 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001576 - InterPro: IPR015901 - InterPro: IPR015911 - InterPro: IPR015824 [H]
Pfam domain/function: PF00162 PGK [H]
EC number: =2.7.2.3 [H]
Molecular weight: Translated: 42602; Mature: 42471
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS00111 PGLYCERATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKKIVSDLDLKGKTVIVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHL CCCHHHHHCCCCCCEEEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCEEEEECC GKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRY CCHHCCCCCCEEEEHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCCC EDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEI CCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCHHHHHHCCCCCEEHHHHHHHHHHCCCH KFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGI HEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCEECE SLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPN EEECCCCHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCC TVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAI HHEEEHHHCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEE SLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK EECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCC >Mature Secondary Structure AKKIVSDLDLKGKTVIVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHL CCHHHHHCCCCCCEEEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCEEEEECC GKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRY CCHHCCCCCCEEEEHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCCC EDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEI CCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCHHHHHHCCCCCEEHHHHHHHHHHCCCH KFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGI HEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCEECE SLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPN EEECCCCHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCC TVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAI HHEEEHHHCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEE SLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK EECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA