Click here to switch to the map view.

The map label for this gene is yvcD [H]

Identifier: 82750468

GI number: 82750468

Start: 787411

End: 788850

Strand: Direct

Name: yvcD [H]

Synonym: SAB0716

Alternate gene names: 82750468

Gene position: 787411-788850 (Clockwise)

Preceding gene: 82750467

Following gene: 82750469

Centisome position: 28.71

GC content: 29.65

Gene sequence:

>1440_bases
ATGGCGCAAAAGAATAATAATGTAATTCCAATGACTTTTGATGATGCATTTTATCGTAAAATGGCTAATCAGAAGTTTAA
ACAAAGAGAATATAAACGAGCTGCTGAATACTTTGAAAAAGTGTTAGAATTGTCACCTGATGATCTGGAAATTCAAATTG
ATTATGCACAATGTCTAGTGCAACTTGGTATTGCTAAAAAAGCAGAACATTTATTTTATGACAATATTATTTATAATAGG
CATCTAGAAGATAGCTTTTATGAATTGAGTCAGCTCAACATTGAAGTTAACGAACCAAACAAGGCATTCTTGTTTGGTAT
TAATTATGTTATTGTTAGCGACGACCAAGAGTATAGAGATGAACTAGATCAAATGTTTGATGTGAAATATCAAAGTGAAG
AACAAATTGAACTTGAAGCTCAATTGTTTGTAGTTCAAATACTATTCCAATATCTTTTTTCTCAAGGTCGATTAAAAGAT
ACAAAGAATTATGTCTTACATCAACCACAAGAAGTTCAAGATCATCGTGTGGTACGTAATTTATTGGCAATGTGTTATTT
ATATCTCGGCGAATATGATACGGCTAAAGCATTGTACGAAGCACTATTACAAGAGGATAGTACAGATATATATGCATTAT
GCCATTATACTTTGCTACTTTATAACACTAAGGAAAATGAACAATACCAAAAGTATTTAAAAATATTAAATAAAGTTGTA
CCTATGAATGACGATGAAAGTTTTAAATTAGGTATTGTTTTAAGTTATTTAAAGCAGTATCGTGCATCACAACAATTGTT
GTATCCTTTATATAAAAAAGGGAAATTTTTATCAATTCAAATGTACAATGCTTTAGCATATAATTATTATTATTTAGGTG
AAGAAGACGAAAGTCATTACTACTGGGATAAATTGAAGCAAATTTCTAAAGTGGAAATTGGACATGCTCCTTGGGTAATT
GAAAATAGCAAAGAAGTTTTTGACCAACATATTTTGCCATTACTTCAAAGTGATGACAGTCATTATCGTTTATATGGTAT
TTTTTTATTGGATCAATTAAATGGCAAAGAAATTGTGATGACGGAAAGTATTTGGCAGGTACTGGAAAATCTAAATAATT
ATGAGAAATTGTATTTAACGTATTTAGTTCAAGGTTTAACGCTCAATAAATTAGACTTCATTCATCGCGGCTTGTTAACG
CTTTACCATAATGAATTATTTGTAAGTGAAAATGATTTAATGGTTGCATGGATTAATCAAGGTGAACTCATAATTGCTGA
AAAAGTAGATTTAACTGATGTTGAGCCATATATCGGTGCGTTTATTTATTTGTATTTTAAAAATCAACCTCGAAACGTTA
CAAAGAAGCAAATTAAAACATGGTTAGGCATAACACAATATAAACTGAACAAAATGATTGAATTTCTCTTGAGCATATAG

Upstream 100 bases:

>100_bases
AAAGTTGTAGCTGGTACGGTTGTTTCAAAAGATATACCGGATAATGGATTTGCATATGGCAACCCTATGTATATAAAAAT
GATTAGGAGGTGACAATTTT

Downstream 100 bases:

>100_bases
ATTTATGAAAAGTTAGATTTATTATATAATGCGCATAATGATTAATAATGAGGAGGCGTTAATAAAATGACTGAAATAGA
TTTTGATATAGCAATTATCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MAQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNR
HLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQEYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKD
TKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVV
PMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVI
ENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLT
LYHNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQIKTWLGITQYKLNKMIEFLLSI

Sequences:

>Translated_479_residues
MAQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNR
HLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQEYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKD
TKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVV
PMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVI
ENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLT
LYHNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQIKTWLGITQYKLNKMIEFLLSI
>Mature_478_residues
AQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRH
LEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQEYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDT
KNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVP
MNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIE
NSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTL
YHNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQIKTWLGITQYKLNKMIEFLLSI

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57133; Mature: 57002

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLV
CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH
QLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQEYRD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEEEEECCCCCEEEEEEEEEEECCCHHHHH
ELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDTKNYVLHQPQEVQDHRVVRN
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHH
LLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVV
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHEEEEEEEEECCCCHHHHHHHHHHHHHC
PMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHY
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEECCCCCCCH
YWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVM
HHHHHHHHHHEECCCCCEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEE
TESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDLMVAWINQ
HHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEEECCCEEEEEECC
GELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQIKTWLGITQYKLNKMIEFLLSI
CCEEEEECCCCCCCCHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLV
CCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH
QLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQEYRD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEEEEECCCCCEEEEEEEEEEECCCHHHHH
ELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDTKNYVLHQPQEVQDHRVVRN
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHH
LLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVV
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHEEEEEEEEECCCCHHHHHHHHHHHHHC
PMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHY
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEECCCCCCCH
YWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVM
HHHHHHHHHHEECCCCCEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEE
TESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDLMVAWINQ
HHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEEECCCEEEEEECC
GELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQIKTWLGITQYKLNKMIEFLLSI
CCEEEEECCCCCCCCHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]