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The map label for this gene is ymdB [C]

Identifier: 82750037

GI number: 82750037

Start: 327101

End: 327901

Strand: Direct

Name: ymdB [C]

Synonym: SAB0275

Alternate gene names: 82750037

Gene position: 327101-327901 (Clockwise)

Preceding gene: 82750036

Following gene: 82750038

Centisome position: 11.93

GC content: 36.33

Gene sequence:

>801_bases
ATGGAAACGTTAAAATCAAATAAAGCGAGACTTGAATATTTAATCAATGATATGCGTCGAGAGAGAAATGACAATGACGT
AATGGTAATGCCATCTTCATTTGAAGATTTGTGGGAATTATATCGAGGTTTAGCAAATGTCAGACCGGCATTACCTGTAA
GTGATGAATATTTAGCTGTACAAGATGCTATGTTAAGTGATTTGAATCGTCAACATGTTACGGATTTGAAGGATTTGAAG
CCGATAAAAGGTGACAATATCTTTGTTTGGCAAGGTGATATCACGACGTTAAAAATCGATGCTATTGTTAATGCTGCAAA
TAGTCGTTTTCTAGGATGTATGCAAGCTAATCATGACTGCAGTGATAATATTATTCATACAAAAGCGGGTGTTCAAGTTC
GACTTGATTGTGCAGAGATTATTCGACAACAAGGGCGCAATGAAGGTGTAGGTAAAGCTAAAATAACACGTGGATATAAT
TTGCCAGCAAAGCATATAATTCATACGGTTGGTCCGCAAATACGTCGATTGCCTGTTTCAAAGATGAATCGGGACTTGTT
AGCTAAATGTTATCTTAGCTGTCTTAAGCTTGCTGATCAACATAGTTTAAATCATGTCGCTTTTTGCTGTATATCTACAG
GTGTATTTGCTTTTCCTCAAGATGAAGCAGCAGAAATTGCTGTTCGAACAGTAGAAAGCTATCTCAAAGAAACAAATTCA
ACATTGAAAGTCGTGTTCAATGTATTTACAGATAAGGATTTACAACTGTATAAGGAGGCATTTAACCGTGATGCAGAGTA
G

Upstream 100 bases:

>100_bases
AGAACCGACAATTTTAAACTCTGAAAAACCAGAAGAAAATTGGTTGTTCAAATTGGATGATGTCGATAAAGAAGCATTCC
TAGCATTACCGGAGGCTTAA

Downstream 100 bases:

>100_bases
TAAATGTAATGCAATGTCTCTTTTAATGGATGACAAGACAAAGCAGGCTGAAGTATTGCGTACTGCGATTGATGAAGCAG
ATGCGATAGTGATTGGAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
METLKSNKARLEYLINDMRRERNDNDVMVMPSSFEDLWELYRGLANVRPALPVSDEYLAVQDAMLSDLNRQHVTDLKDLK
PIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDCSDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKITRGYN
LPAKHIIHTVGPQIRRLPVSKMNRDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
TLKVVFNVFTDKDLQLYKEAFNRDAE

Sequences:

>Translated_266_residues
METLKSNKARLEYLINDMRRERNDNDVMVMPSSFEDLWELYRGLANVRPALPVSDEYLAVQDAMLSDLNRQHVTDLKDLK
PIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDCSDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKITRGYN
LPAKHIIHTVGPQIRRLPVSKMNRDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
TLKVVFNVFTDKDLQLYKEAFNRDAE
>Mature_266_residues
METLKSNKARLEYLINDMRRERNDNDVMVMPSSFEDLWELYRGLANVRPALPVSDEYLAVQDAMLSDLNRQHVTDLKDLK
PIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDCSDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKITRGYN
LPAKHIIHTVGPQIRRLPVSKMNRDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
TLKVVFNVFTDKDLQLYKEAFNRDAE

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=180, Percent_Identity=39.4444444444444, Blast_Score=129, Evalue=2e-30,
Organism=Homo sapiens, GI13569840, Length=175, Percent_Identity=41.1428571428571, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI207450721, Length=163, Percent_Identity=33.7423312883436, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI8923143, Length=163, Percent_Identity=33.7423312883436, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI20336746, Length=173, Percent_Identity=30.0578034682081, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI154813199, Length=182, Percent_Identity=29.1208791208791, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI93141020, Length=167, Percent_Identity=29.3413173652695, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI4758496, Length=167, Percent_Identity=29.3413173652695, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI93141018, Length=167, Percent_Identity=29.3413173652695, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1787283, Length=181, Percent_Identity=38.6740331491713, Blast_Score=109, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17538214, Length=178, Percent_Identity=40.4494382022472, Blast_Score=118, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24586353, Length=157, Percent_Identity=36.3057324840764, Blast_Score=91, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 30142; Mature: 30142

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLKSNKARLEYLINDMRRERNDNDVMVMPSSFEDLWELYRGLANVRPALPVSDEYLAV
CCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
QDAMLSDLNRQHVTDLKDLKPIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDC
HHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEECCCCCC
SDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKITRGYNLPAKHIIHTVGPQIRRLPVS
CCCEEEECCCCEEEECHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHCHHHHHCCHH
KMNRDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
HHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHCCC
TLKVVFNVFTDKDLQLYKEAFNRDAE
HHHHHHHHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
METLKSNKARLEYLINDMRRERNDNDVMVMPSSFEDLWELYRGLANVRPALPVSDEYLAV
CCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
QDAMLSDLNRQHVTDLKDLKPIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDC
HHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEECCCCCC
SDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKITRGYNLPAKHIIHTVGPQIRRLPVS
CCCEEEECCCCEEEECHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHCHHHHHCCHH
KMNRDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
HHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHCCC
TLKVVFNVFTDKDLQLYKEAFNRDAE
HHHHHHHHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA