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The map label for this gene is ubiD

Identifier: 82703723

GI number: 82703723

Start: 2995535

End: 2996998

Strand: Reverse

Name: ubiD

Synonym: Nmul_A2610

Alternate gene names: 82703723

Gene position: 2996998-2995535 (Counterclockwise)

Preceding gene: 82703724

Following gene: 82703722

Centisome position: 94.12

GC content: 57.99

Gene sequence:

>1464_bases
ATGAAGTACAAGGACCTGCGCGATTTTCTTGCGCAACTCGAAAGACAGGGCGAGCTGAAACGCGTGGCAGTCGAGATCGA
TCCTCATCTGGAAATGACGGAAATCTGCGACCGCCTGCTGAAAGCGGGCGGTCCTGCCGTCCTGTTCGAAAAATCCAGGG
GGCATGACATTCCCGTGCTGGGAAACCTGTTCGGCACGCCGAAGCGCGTGGCGATGGGCATGGGGCAGGATTCGGTCGAG
GCGCTGCGCGAGGTGGGCAAGCTCCTTGCCTATCTGAAAGAACCCGATCCTCCCAAAGGCTTGAAAGACGCGTGGGAGAA
ATTGCCCGTGCTGAAACAGGTGCTCAACATGGCGCCAAAGGAGCTCTCAAGGGCATCCTGCCAGGAAATCGTCTGGGAAG
GCAAGGATGTGGACCTCGGCAAACTGCCGATCCAGACGTGCTGGCCGGGCGACGCGGGCCCGTTGATCACATGGGGACTG
ACCGTTACCAAAGGTCCCCACAAGACCCGGCAGAATCTCGGCATTTACCGCCAGCAGGTGATCGCCCCCAATAAAGTCAT
CATGCGCTGGCTGGCTCACCGAGGCGGCGCCCTCGATTTTCGCGACTTCACTCTTGCCAATCCGGGACAGCCCTATCCCA
TTGCAGTAGCCCTGGGGGCGGACCCGGCAACCATACTCGGTGCTGTCACTCCGGTGCCGGATAGTTTGAGCGAGTACCAG
TTCGCCGGACTGCTGCGAGGCGCGAAAACCGAAATCGTCAAATGCCTGACGCACGATTTGCAGGTTCCCGCCAGCGCCGA
AATCGTGCTGGAAGGATACATCCATCCCGATGAGACAGCGGTGGAAGGCCCCTTCGGCGACCACACCGGCTATTACAACG
AGCAGGAAACCTTCCCGGTATTTACCATCGAGCGCATCACCATGCGCCGCGATCCGATCTACCATTCCACCTACACTGGC
AAGCCGCCGGATGAGCCCGCCATACTGGGTGTAGCGCTGAACGAAGTATTCGTGCCCCTGCTGCAAAAGCAGTTCACCGA
AATCGTCGATTTCTACCTGCCGCCGGAAGGCTGTTCCTACCGCATGGCCGTGGTGAGCATGAAGAAGCAATATGCTGGCC
ACGCCAAGCGCATCATGTTCGGCGTGTGGAGCTTCCTGCGGCAATTCATGTACACCAAATTCATTATCGTCACCGATGAT
GACGTCAACATCCGTGACTGGAAGGAAGTCATCTGGGCCATCACCACGCGAGTCGATCCTGCGCGCGATACATTGATCGT
GGAAAACACGCCTATCGATTATCTCGACTTCGCAAGCCCCGTTTCAGGGCTGGGTGGAAAAATGGGGCTGGATGCTACCA
ACAAATGGCCAGGGGAAACCAGCCGGGAATGGGGCAAGCCGATTACGATGGATGAGGTGGTGAAGGCAAGGGTGGATGGG
ATGTGGACGGATTTGGACTTGTGA

Upstream 100 bases:

>100_bases
TCTCCACAACAACTGGGTGGGTGCGACGATATTTGCCGGTATCGTGCTGGATTACTTGGTAAGAGCGGCTTCTTAAGGTT
TCCGGACGTAAAGGGCGTAA

Downstream 100 bases:

>100_bases
AGCTCCCTGTAAAGCAATAGCACTTCCTTATGAGTGAGAATCCGATCGATGCTTTTATCCCCGAGGACATCCGGGATCTT
TACGAAATTCATAATTACCG

Product: carboxylyase-like protein

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MKYKDLRDFLAQLERQGELKRVAVEIDPHLEMTEICDRLLKAGGPAVLFEKSRGHDIPVLGNLFGTPKRVAMGMGQDSVE
ALREVGKLLAYLKEPDPPKGLKDAWEKLPVLKQVLNMAPKELSRASCQEIVWEGKDVDLGKLPIQTCWPGDAGPLITWGL
TVTKGPHKTRQNLGIYRQQVIAPNKVIMRWLAHRGGALDFRDFTLANPGQPYPIAVALGADPATILGAVTPVPDSLSEYQ
FAGLLRGAKTEIVKCLTHDLQVPASAEIVLEGYIHPDETAVEGPFGDHTGYYNEQETFPVFTIERITMRRDPIYHSTYTG
KPPDEPAILGVALNEVFVPLLQKQFTEIVDFYLPPEGCSYRMAVVSMKKQYAGHAKRIMFGVWSFLRQFMYTKFIIVTDD
DVNIRDWKEVIWAITTRVDPARDTLIVENTPIDYLDFASPVSGLGGKMGLDATNKWPGETSREWGKPITMDEVVKARVDG
MWTDLDL

Sequences:

>Translated_487_residues
MKYKDLRDFLAQLERQGELKRVAVEIDPHLEMTEICDRLLKAGGPAVLFEKSRGHDIPVLGNLFGTPKRVAMGMGQDSVE
ALREVGKLLAYLKEPDPPKGLKDAWEKLPVLKQVLNMAPKELSRASCQEIVWEGKDVDLGKLPIQTCWPGDAGPLITWGL
TVTKGPHKTRQNLGIYRQQVIAPNKVIMRWLAHRGGALDFRDFTLANPGQPYPIAVALGADPATILGAVTPVPDSLSEYQ
FAGLLRGAKTEIVKCLTHDLQVPASAEIVLEGYIHPDETAVEGPFGDHTGYYNEQETFPVFTIERITMRRDPIYHSTYTG
KPPDEPAILGVALNEVFVPLLQKQFTEIVDFYLPPEGCSYRMAVVSMKKQYAGHAKRIMFGVWSFLRQFMYTKFIIVTDD
DVNIRDWKEVIWAITTRVDPARDTLIVENTPIDYLDFASPVSGLGGKMGLDATNKWPGETSREWGKPITMDEVVKARVDG
MWTDLDL
>Mature_487_residues
MKYKDLRDFLAQLERQGELKRVAVEIDPHLEMTEICDRLLKAGGPAVLFEKSRGHDIPVLGNLFGTPKRVAMGMGQDSVE
ALREVGKLLAYLKEPDPPKGLKDAWEKLPVLKQVLNMAPKELSRASCQEIVWEGKDVDLGKLPIQTCWPGDAGPLITWGL
TVTKGPHKTRQNLGIYRQQVIAPNKVIMRWLAHRGGALDFRDFTLANPGQPYPIAVALGADPATILGAVTPVPDSLSEYQ
FAGLLRGAKTEIVKCLTHDLQVPASAEIVLEGYIHPDETAVEGPFGDHTGYYNEQETFPVFTIERITMRRDPIYHSTYTG
KPPDEPAILGVALNEVFVPLLQKQFTEIVDFYLPPEGCSYRMAVVSMKKQYAGHAKRIMFGVWSFLRQFMYTKFIIVTDD
DVNIRDWKEVIWAITTRVDPARDTLIVENTPIDYLDFASPVSGLGGKMGLDATNKWPGETSREWGKPITMDEVVKARVDG
MWTDLDL

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=485, Percent_Identity=74.639175257732, Blast_Score=776, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=455, Percent_Identity=25.2747252747253, Blast_Score=132, Evalue=9e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_NITMU (Q2Y5S4)

Other databases:

- EMBL:   CP000103
- RefSeq:   YP_413289.1
- ProteinModelPortal:   Q2Y5S4
- SMR:   Q2Y5S4
- STRING:   Q2Y5S4
- GeneID:   3786239
- GenomeReviews:   CP000103_GR
- KEGG:   nmu:Nmul_A2610
- eggNOG:   COG0043
- HOGENOM:   HBG564733
- OMA:   LNRIYTP
- PhylomeDB:   Q2Y5S4
- ProtClustDB:   CLSK585971
- BioCyc:   NMUL323848:NMUL_A2610-MONOMER
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 54488; Mature: 54488

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKDLRDFLAQLERQGELKRVAVEIDPHLEMTEICDRLLKAGGPAVLFEKSRGHDIPVL
CCHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEE
GNLFGTPKRVAMGMGQDSVEALREVGKLLAYLKEPDPPKGLKDAWEKLPVLKQVLNMAPK
CCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCHH
ELSRASCQEIVWEGKDVDLGKLPIQTCWPGDAGPLITWGLTVTKGPHKTRQNLGIYRQQV
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
IAPNKVIMRWLAHRGGALDFRDFTLANPGQPYPIAVALGADPATILGAVTPVPDSLSEYQ
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCHHHHH
FAGLLRGAKTEIVKCLTHDLQVPASAEIVLEGYIHPDETAVEGPFGDHTGYYNEQETFPV
HHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
FTIERITMRRDPIYHSTYTGKPPDEPAILGVALNEVFVPLLQKQFTEIVDFYLPPEGCSY
EEEEHHHHHCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RMAVVSMKKQYAGHAKRIMFGVWSFLRQFMYTKFIIVTDDDVNIRDWKEVIWAITTRVDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCC
ARDTLIVENTPIDYLDFASPVSGLGGKMGLDATNKWPGETSREWGKPITMDEVVKARVDG
CCCEEEEECCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCC
MWTDLDL
CEECCCC
>Mature Secondary Structure
MKYKDLRDFLAQLERQGELKRVAVEIDPHLEMTEICDRLLKAGGPAVLFEKSRGHDIPVL
CCHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEE
GNLFGTPKRVAMGMGQDSVEALREVGKLLAYLKEPDPPKGLKDAWEKLPVLKQVLNMAPK
CCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCHH
ELSRASCQEIVWEGKDVDLGKLPIQTCWPGDAGPLITWGLTVTKGPHKTRQNLGIYRQQV
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
IAPNKVIMRWLAHRGGALDFRDFTLANPGQPYPIAVALGADPATILGAVTPVPDSLSEYQ
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCHHHHH
FAGLLRGAKTEIVKCLTHDLQVPASAEIVLEGYIHPDETAVEGPFGDHTGYYNEQETFPV
HHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
FTIERITMRRDPIYHSTYTGKPPDEPAILGVALNEVFVPLLQKQFTEIVDFYLPPEGCSY
EEEEHHHHHCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RMAVVSMKKQYAGHAKRIMFGVWSFLRQFMYTKFIIVTDDDVNIRDWKEVIWAITTRVDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCC
ARDTLIVENTPIDYLDFASPVSGLGGKMGLDATNKWPGETSREWGKPITMDEVVKARVDG
CCCEEEEECCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCC
MWTDLDL
CEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA