Click here to switch to the map view.

The map label for this gene is gspD [C]

Identifier: 82703477

GI number: 82703477

Start: 2686314

End: 2688038

Strand: Reverse

Name: gspD [C]

Synonym: Nmul_A2360

Alternate gene names: 82703477

Gene position: 2688038-2686314 (Counterclockwise)

Preceding gene: 82703478

Following gene: 82703476

Centisome position: 84.42

GC content: 64.06

Gene sequence:

>1725_bases
ATGAAGTCGCAGCTCTCCCTGAACAGATTTTCTGTCATCCCGATGCCCATGACTACGTCAGATGTCGTCGCTTTCCGTCG
AACCCCCGCTTTTGCCCGCCCACCCGTGCGGGCGGCGCTGATCACGGTGCTGCTGGGGATAACGCTGGGACTGAGTGGCG
AGCTTTCCGCGGCGAATCAGACCGCGGCGGGTCAAGCGATGGGCCGGCCGATGGTTGCCGCGGCGAAGCCGGCAGGGCCA
GTGGAAGGGTTGCTCGCAGCCTCCGACATGGATGTGACCTATGGCAAATCGGCCCTGCTCAGGCTGCCGGCCCCGGTCAC
GCGGATATCGGTAGGCAATCCGGACGTGGCCGATGTGACGCTGATCAGTCCGGGCGAAATCTACGTGCTGGGCAAGTCGA
TCGGGACGACCAACGTCATTCTGTGGACCCGCGGCGGACTAGCGGGAAGTAGCCAGACTGCCGTCATCAATGTCACTGTC
ATCCTGGATGCAGCGGCCCTGCAAGCCAAGCTGCGGGAACTCATGCCGGGTGAAACCGACATCAAGGTGACTGCGGCGGG
GGATTCGCTGGTCCTCTCCGGCACGGTATCCGATACGCTGAAAGCGGATCGGGCAGTGGCGCTGGCGGATGCTTATGTGC
GCGCCGCGGCAGGGGGCCAAGGCGGGCAGCGTGGCGGAAAGCAGGGCGGGGACGCGTCCGGCGGGCAGGGCGGAGGAGAC
GAACCCAAGGGCGCCGGCCAGGGGCTGGGCAGCGTCCAGGTGGTCAATCTGTTGCAGGTGGGCAGCAACCAGCAGGTGAT
GCTCGAAGTGAAGGTGGCGGAGATCAACCGCAAGGTCGCGGAAAGGCTCGGTTTCGATTTCCAGAGAGCGGCCAGAAAAG
CCGGGAGCGCCTGGACGCAGATCATGACCGGTATCATTGGCGGCGCGCCCGGCATGCTGTTCCAGTCAAGGGGCACCCCC
GAGATCGGCGACGCTTTCCTGATCGATGCCGAGAAAAAGGACGAACTCTTCCACATCCTGGCCGAACCCAACATCGTGGC
GATCAGCGGCCAGGAAGCGAGCTTCCTGGTGGGTGGGGAAGTCATGATCCCCATTCCCCAATACGCGGGTGTGATCACCC
TTCAGTCCCGGCAGTTCGGCGTGGGCCTGCGGTTCACCCCCACCGTGCTGGAGGAGGGCCGCATCAATCTGGTGGTGTCG
CCGGAAGTGACGGAACTGGTCAAGTTCGACACCATCGCCACTACCGGGCTTGGGGGAGTGCTGGCTGTACCCACCTTCAC
GACGCGGCGCGTATCCACCACGGTGCAGCTGCGCGACGGCCAGTCACTGGCCATCGGCGGCCTGCTGCAGGACAACATCA
AGGAAACGATCAAGCGCTTCCCGGTGCTGGGAGAGATTCCGATACTCGGCGCCCTGTTCCGCAGCAGCGATTTCCAGAAA
GACAAGACCGAGCTCATGGTGGTGGTGACGCCGCGCCTGATCAAACCGCTGCAACCCGATTACGCTCTGCCGACCGATGC
TTTCGTCCAGCCTGACCGACCGGACTTCCTGTTCGACGGGAGGATGGAAGGCTCGCCGACGGGCCTGCTGCCCAAGGGCA
TGCCGGCATCGGAATACCCTCCGCAGTATCCACCCTCGGGGCAACTATCGGGCCAACCACAGGGCCAACCACAGGGCCAA
CCACAGCCCCAGCCCGGGCGTGATGCCGGGTTCGAGATGAAATGA

Upstream 100 bases:

>100_bases
CCCCTGTCCGGCGTACTCCGGTGGCCACCCCCAGGGCCGGCGTGGAAATCATCCGTGGCATTGAAAGAACTGAAGCAAAA
CCCGTGGAAAAGGAAACCCG

Downstream 100 bases:

>100_bases
GGATGAAATGAGAAACGATGAGGACGCACCCAGCATGCACACAAACCTGATAACCGCCACTCCAGCCAGCTTGCGCCCCG
GCAGGGCAATCGTTCTGGCA

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 574; Mature: 574

Protein sequence:

>574_residues
MKSQLSLNRFSVIPMPMTTSDVVAFRRTPAFARPPVRAALITVLLGITLGLSGELSAANQTAAGQAMGRPMVAAAKPAGP
VEGLLAASDMDVTYGKSALLRLPAPVTRISVGNPDVADVTLISPGEIYVLGKSIGTTNVILWTRGGLAGSSQTAVINVTV
ILDAAALQAKLRELMPGETDIKVTAAGDSLVLSGTVSDTLKADRAVALADAYVRAAAGGQGGQRGGKQGGDASGGQGGGD
EPKGAGQGLGSVQVVNLLQVGSNQQVMLEVKVAEINRKVAERLGFDFQRAARKAGSAWTQIMTGIIGGAPGMLFQSRGTP
EIGDAFLIDAEKKDELFHILAEPNIVAISGQEASFLVGGEVMIPIPQYAGVITLQSRQFGVGLRFTPTVLEEGRINLVVS
PEVTELVKFDTIATTGLGGVLAVPTFTTRRVSTTVQLRDGQSLAIGGLLQDNIKETIKRFPVLGEIPILGALFRSSDFQK
DKTELMVVVTPRLIKPLQPDYALPTDAFVQPDRPDFLFDGRMEGSPTGLLPKGMPASEYPPQYPPSGQLSGQPQGQPQGQ
PQPQPGRDAGFEMK

Sequences:

>Translated_574_residues
MKSQLSLNRFSVIPMPMTTSDVVAFRRTPAFARPPVRAALITVLLGITLGLSGELSAANQTAAGQAMGRPMVAAAKPAGP
VEGLLAASDMDVTYGKSALLRLPAPVTRISVGNPDVADVTLISPGEIYVLGKSIGTTNVILWTRGGLAGSSQTAVINVTV
ILDAAALQAKLRELMPGETDIKVTAAGDSLVLSGTVSDTLKADRAVALADAYVRAAAGGQGGQRGGKQGGDASGGQGGGD
EPKGAGQGLGSVQVVNLLQVGSNQQVMLEVKVAEINRKVAERLGFDFQRAARKAGSAWTQIMTGIIGGAPGMLFQSRGTP
EIGDAFLIDAEKKDELFHILAEPNIVAISGQEASFLVGGEVMIPIPQYAGVITLQSRQFGVGLRFTPTVLEEGRINLVVS
PEVTELVKFDTIATTGLGGVLAVPTFTTRRVSTTVQLRDGQSLAIGGLLQDNIKETIKRFPVLGEIPILGALFRSSDFQK
DKTELMVVVTPRLIKPLQPDYALPTDAFVQPDRPDFLFDGRMEGSPTGLLPKGMPASEYPPQYPPSGQLSGQPQGQPQGQ
PQPQPGRDAGFEMK
>Mature_574_residues
MKSQLSLNRFSVIPMPMTTSDVVAFRRTPAFARPPVRAALITVLLGITLGLSGELSAANQTAAGQAMGRPMVAAAKPAGP
VEGLLAASDMDVTYGKSALLRLPAPVTRISVGNPDVADVTLISPGEIYVLGKSIGTTNVILWTRGGLAGSSQTAVINVTV
ILDAAALQAKLRELMPGETDIKVTAAGDSLVLSGTVSDTLKADRAVALADAYVRAAAGGQGGQRGGKQGGDASGGQGGGD
EPKGAGQGLGSVQVVNLLQVGSNQQVMLEVKVAEINRKVAERLGFDFQRAARKAGSAWTQIMTGIIGGAPGMLFQSRGTP
EIGDAFLIDAEKKDELFHILAEPNIVAISGQEASFLVGGEVMIPIPQYAGVITLQSRQFGVGLRFTPTVLEEGRINLVVS
PEVTELVKFDTIATTGLGGVLAVPTFTTRRVSTTVQLRDGQSLAIGGLLQDNIKETIKRFPVLGEIPILGALFRSSDFQK
DKTELMVVVTPRLIKPLQPDYALPTDAFVQPDRPDFLFDGRMEGSPTGLLPKGMPASEYPPQYPPSGQLSGQPQGQPQGQ
PQPQPGRDAGFEMK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=209, Percent_Identity=29.6650717703349, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1789793, Length=242, Percent_Identity=28.099173553719, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 60075; Mature: 60075

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSQLSLNRFSVIPMPMTTSDVVAFRRTPAFARPPVRAALITVLLGITLGLSGELSAANQ
CCCCCCCCEEEEEECCCCHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
TAAGQAMGRPMVAAAKPAGPVEGLLAASDMDVTYGKSALLRLPAPVTRISVGNPDVADVT
CHHHHHHCCCEEEECCCCCCCCHHEEECCCCEECCCCEEEECCCCEEEEECCCCCCCEEE
LISPGEIYVLGKSIGTTNVILWTRGGLAGSSQTAVINVTVILDAAALQAKLRELMPGETD
EECCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEEEECHHHHHHHHHHHCCCCCC
IKVTAAGDSLVLSGTVSDTLKADRAVALADAYVRAAAGGQGGQRGGKQGGDASGGQGGGD
EEEEECCCCEEEECCCHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
EPKGAGQGLGSVQVVNLLQVGSNQQVMLEVKVAEINRKVAERLGFDFQRAARKAGSAWTQ
CCCCCCCCCCCEEEEHHHHCCCCCEEEEEEEHHHHHHHHHHHHCCCHHHHHHHHCHHHHH
IMTGIIGGAPGMLFQSRGTPEIGDAFLIDAEKKDELFHILAEPNIVAISGQEASFLVGGE
HHHHHHCCCCCCEEECCCCCCCCCEEEEECCCCCCEEEEEECCCEEEEECCCCEEEECCE
VMIPIPQYAGVITLQSRQFGVGLRFTPTVLEEGRINLVVSPEVTELVKFDTIATTGLGGV
EEEECCCCCCEEEEECCCCCCCEEECHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCE
LAVPTFTTRRVSTTVQLRDGQSLAIGGLLQDNIKETIKRFPVLGEIPILGALFRSSDFQK
EECCCEEEEEEEEEEEEECCCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
DKTELMVVVTPRLIKPLQPDYALPTDAFVQPDRPDFLFDGRMEGSPTGLLPKGMPASEYP
CCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
PQYPPSGQLSGQPQGQPQGQPQPQPGRDAGFEMK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKSQLSLNRFSVIPMPMTTSDVVAFRRTPAFARPPVRAALITVLLGITLGLSGELSAANQ
CCCCCCCCEEEEEECCCCHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
TAAGQAMGRPMVAAAKPAGPVEGLLAASDMDVTYGKSALLRLPAPVTRISVGNPDVADVT
CHHHHHHCCCEEEECCCCCCCCHHEEECCCCEECCCCEEEECCCCEEEEECCCCCCCEEE
LISPGEIYVLGKSIGTTNVILWTRGGLAGSSQTAVINVTVILDAAALQAKLRELMPGETD
EECCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEEEECHHHHHHHHHHHCCCCCC
IKVTAAGDSLVLSGTVSDTLKADRAVALADAYVRAAAGGQGGQRGGKQGGDASGGQGGGD
EEEEECCCCEEEECCCHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
EPKGAGQGLGSVQVVNLLQVGSNQQVMLEVKVAEINRKVAERLGFDFQRAARKAGSAWTQ
CCCCCCCCCCCEEEEHHHHCCCCCEEEEEEEHHHHHHHHHHHHCCCHHHHHHHHCHHHHH
IMTGIIGGAPGMLFQSRGTPEIGDAFLIDAEKKDELFHILAEPNIVAISGQEASFLVGGE
HHHHHHCCCCCCEEECCCCCCCCCEEEEECCCCCCEEEEEECCCEEEEECCCCEEEECCE
VMIPIPQYAGVITLQSRQFGVGLRFTPTVLEEGRINLVVSPEVTELVKFDTIATTGLGGV
EEEECCCCCCEEEEECCCCCCCEEECHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCE
LAVPTFTTRRVSTTVQLRDGQSLAIGGLLQDNIKETIKRFPVLGEIPILGALFRSSDFQK
EECCCEEEEEEEEEEEEECCCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
DKTELMVVVTPRLIKPLQPDYALPTDAFVQPDRPDFLFDGRMEGSPTGLLPKGMPASEYP
CCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
PQYPPSGQLSGQPQGQPQGQPQPQPGRDAGFEMK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]