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The map label for this gene is fecI [C]

Identifier: 82702960

GI number: 82702960

Start: 2120287

End: 2120796

Strand: Reverse

Name: fecI [C]

Synonym: Nmul_A1839

Alternate gene names: 82702960

Gene position: 2120796-2120287 (Counterclockwise)

Preceding gene: 82702965

Following gene: 82702958

Centisome position: 66.6

GC content: 55.29

Gene sequence:

>510_bases
ATGATTGTCGAAGAGCAGGTTGAACTGAGCGAAGTCTTCATGGCTCATCGGTCCCAGTTGCGCTGGGCGGCGCTCAAGAT
TCTCGGTAATCCCGAGCGGGCGGAGGATGTGGTGCAGGATGCATATCTCAAAGTATCGGAAGCAGCGGCAGTATTCCACG
TCAAGCAGCCCGTCGCATACCTGTTCCAGATGGTTCGCAATCTTGCCATCGATCATCATCGGCGCATTTCATTCGAATTG
AATCTTTTCGAGGGCGAAGACAACGGGCTGCATGTGCCCTCCCATATTGGCATGCCCGAAGCCACGGTCATCAGCCGCGA
GCATCTGAAACTGGTTGCAAAAGCAATATCGGAACTTCCGGAGCGGACGAGGCGCGCTTTTGAACTTCATCGTCTGGAAG
GGCAGACGCACCGTGCCATCGCTGCCGAACTGGCTATTTCGACTTCCCTAGTGAATATCCTGATCCACGAGGCACTAGAC
CACTGCCGCGCCGCTCTCCAATCCACCTAG

Upstream 100 bases:

>100_bases
AGAACCGGAAGTTGATCCATATTGTAAAATAGAAATTGCTATATGATAATAAGAATACTTCTCGTTATTGTTATTATATG
CTTTTTGTGGAGATGCGGTA

Downstream 100 bases:

>100_bases
TCTCCCACTTGATCACTGCCAGCCTGGATCACTCCTGTAGCCTGGAAGCATTTGCACAACGGTATCCGCTATACTTGTTT
CGGGTAAGTTTAAAGAATCG

Product: extracytoplasmic-function sigma-70 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; Extracytoplasmic-Function Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma Factor FecI; RNA Polymerase Sigma-70 Family Protein; Extracytoplasmic-Function Sigma-70 Factor PvdS; Fec I Like Protein; ECF Subfamily RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-70 Factor; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma-70 Factor; RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70 Factor FecI; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor FecI Family; ECF Family Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor FECI Protein; ECF Family RNA Polymerase Sigma-70 Factor; FecI-Like Sigma-; Ferric Regulator Sigma-24 Subunit; RNA Polymerase Sigma Factor Sigma-70 Family Protein; DNA-Directed RNA Polymerase Sigma-E/Sigma-24/FecI; FecI Like Protein; RNA Polymerase Sigma Factor ECF Subfamily; Anti-FecI Sigma Factor FecR; FecI-Like Protein; ECF Sigma Factor FecI Family; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MIVEEQVELSEVFMAHRSQLRWAALKILGNPERAEDVVQDAYLKVSEAAAVFHVKQPVAYLFQMVRNLAIDHHRRISFEL
NLFEGEDNGLHVPSHIGMPEATVISREHLKLVAKAISELPERTRRAFELHRLEGQTHRAIAAELAISTSLVNILIHEALD
HCRAALQST

Sequences:

>Translated_169_residues
MIVEEQVELSEVFMAHRSQLRWAALKILGNPERAEDVVQDAYLKVSEAAAVFHVKQPVAYLFQMVRNLAIDHHRRISFEL
NLFEGEDNGLHVPSHIGMPEATVISREHLKLVAKAISELPERTRRAFELHRLEGQTHRAIAAELAISTSLVNILIHEALD
HCRAALQST
>Mature_169_residues
MIVEEQVELSEVFMAHRSQLRWAALKILGNPERAEDVVQDAYLKVSEAAAVFHVKQPVAYLFQMVRNLAIDHHRRISFEL
NLFEGEDNGLHVPSHIGMPEATVISREHLKLVAKAISELPERTRRAFELHRLEGQTHRAIAAELAISTSLVNILIHEALD
HCRAALQST

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19124; Mature: 19124

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVEEQVELSEVFMAHRSQLRWAALKILGNPERAEDVVQDAYLKVSEAAAVFHVKQPVAY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFQMVRNLAIDHHRRISFELNLFEGEDNGLHVPSHIGMPEATVISREHLKLVAKAISELP
HHHHHHHHHHHCCCEEEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ERTRRAFELHRLEGQTHRAIAAELAISTSLVNILIHEALDHCRAALQST
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIVEEQVELSEVFMAHRSQLRWAALKILGNPERAEDVVQDAYLKVSEAAAVFHVKQPVAY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFQMVRNLAIDHHRRISFELNLFEGEDNGLHVPSHIGMPEATVISREHLKLVAKAISELP
HHHHHHHHHHHCCCEEEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ERTRRAFELHRLEGQTHRAIAAELAISTSLVNILIHEALDHCRAALQST
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA